PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01481g03011.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 369aa    MW: 41341.9 Da    PI: 4.9396
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01481g03011.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM73.74.6e-2328104176
                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknr 76 
                               l+pGfrFhPtdeelv +yL++k+ gk++++ ++++e+d+yk+ePw+L +  ++k+++ ewyfFs+ dkky+ ++ k+r
  Niben101Scf01481g03011.1  28 LAPGFRFHPTDEELVRYYLRRKACGKPFRF-QAVTEIDVYKSEPWELAEysSLKSRDLEWYFFSPVDKKYEYSSLKSR 104
                               579*************************99.88**************84346777888************97766555 PP
2NAM99.45e-3110217752128
                       NAM  52 kaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                               k+++ ewyfFs+ dkky +g+r nrat +gyWkatgkd+ v + k++++g+kktLvf++grap+g++t+Wvmheyrl
  Niben101Scf01481g03011.1 102 KSRDLEWYFFSPVDKKYGNGSRLNRATGQGYWKATGKDRFVRH-KSQTIGMKKTLVFHSGRAPDGQRTNWVMHEYRL 177
                               45677*************************************9.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.41E-252498IPR003441NAC domain
PROSITE profilePS5100555.17428200IPR003441NAC domain
PfamPF023651.1E-2730177IPR003441NAC domain
SuperFamilySSF1019414.58E-39102200IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MEQEGSLVVA AAAGSVTVAA PAPSPTSLAP GFRFHPTDEE LVRYYLRRKA CGKPFRFQAV  60
TEIDVYKSEP WELAEYSSLK SRDLEWYFFS PVDKKYEYSS LKSRDLEWYF FSPVDKKYGN  120
GSRLNRATGQ GYWKATGKDR FVRHKSQTIG MKKTLVFHSG RAPDGQRTNW VMHEYRLADE  180
ELEKAGIAQD SFVLCRIFQK SGLGPPNGDR YAPFVEEEWD DDVAMIPGGE AEDDVANGDE  240
ARVEGNDLDQ DALRKAPRYI ENLIETQSLP LVCKRESSDD IELLSLSQSK RSKHEDPSSS  300
RANGSEDSTI TSQDPPTTMM TKINCSPTLL GFPLLVSTET KEGQPSNPPT FDSSNLEKSV  360
PPGYLKXLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A5e-492720019168NAC domain-containing protein 19
3swm_B5e-492720019168NAC domain-containing protein 19
3swm_C5e-492720019168NAC domain-containing protein 19
3swm_D5e-492720019168NAC domain-containing protein 19
3swp_A5e-492720019168NAC domain-containing protein 19
3swp_B5e-492720019168NAC domain-containing protein 19
3swp_C5e-492720019168NAC domain-containing protein 19
3swp_D5e-492720019168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC051/NAC052 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). {ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00342DAPTransfer from AT3G10480Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009796718.10.0PREDICTED: NAC domain-containing protein 78-like
RefseqXP_016464323.10.0PREDICTED: NAC domain-containing protein 78-like
SwissprotQ9SQX96e-92NAC50_ARATH; NAC domain containing protein 50
TrEMBLA0A1S3ZJ250.0A0A1S3ZJ25_TOBAC; NAC domain-containing protein 78-like
TrEMBLA0A1U7Y0R10.0A0A1U7Y0R1_NICSY; NAC domain-containing protein 78-like
STRINGXP_009796718.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31402448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10490.14e-87NAC domain containing protein 52
Publications ? help Back to Top
  1. Zhang S, et al.
    C-terminal domains of a histone demethylase interact with a pair of transcription factors and mediate specific chromatin association.
    Cell Discov, 2019.
    [PMID:26617990]