PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf01494g10004.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 245aa MW: 27784.9 Da PI: 8.3624

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf01494g10004.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.5	0.00022	95	117	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C k F ++ L H++ H Niben101Scf01494g10004.1 95 FECQYCFKQFANSQALGGHQNAH 117 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	7.37E-6	93	122	No hit	No description
Gene3D	G3DSA:3.30.160.60	9.3E-5	93	121	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.427	95	122	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	97	117	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MTKDVSSTFH SPLSNNGENY ESSSKSCVEN KRLKLFGFEL EPSSNIQKNP KEDQGDHESV 60 NSSSASTVSS GRDQEKLLPA SNGKPHDHEE IMKKFECQYC FKQFANSQAL GGHQNAHKKE 120 RMRKKRLQLQ ARKASLSCYL QPFQNSNNNI NYQFYDPNSF FGNSDQFILY DESQISFSPY 180 DQDSHVIAGK WQFQQDSCMF TLTHGEKSRG KYSMPASVMK PETLPNSASK QKCKSLDLQL 240 GLGLH

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019257938.1	1e-154	PREDICTED: zinc finger protein 5
TrEMBL	A0A1J6HSV2	1e-152	A0A1J6HSV2_NICAT; Zinc finger protein 5
STRING	XP_009789685.1	1e-150	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5136	21	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10480.1	3e-16	zinc finger protein 5