PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01495g00008.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 140aa    MW: 15829.2 Da    PI: 9.3177
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01495g00008.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.000296282323
                              ETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                              C++Cg+ Fs    L  H+r+H
  Niben101Scf01495g00008.1 62 CSYCGEEFSVGQALGGHMRKH 82
                              ********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.24E-81782No hitNo description
PfamPF139122.4E-111943IPR007087Zinc finger, C2H2
SMARTSM003550.81941IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.8271946IPR007087Zinc finger, C2H2
PROSITE patternPS0002802141IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.4E-45483IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139125.7E-86083IPR007087Zinc finger, C2H2
PROSITE profilePS501579.3496082IPR007087Zinc finger, C2H2
SMARTSM003550.576082IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806284IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MANCVNILEK NSSLARRLFE CRTCKKQFES FQALGGHRAS HKKPKLNTVV DLIKSNKKKH  60
GCSYCGEEFS VGQALGGHMR KHRHKLGELQ KQKQQDSDVD NSAAEEVVEK KISGTEKVLF  120
LDLNLTPYEN ELMLGLSRLE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009779270.13e-82PREDICTED: zinc finger protein ZAT11-like
RefseqXP_009779271.13e-82PREDICTED: zinc finger protein ZAT11-like
SwissprotQ9SLD41e-28ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLA0A1U7WYF47e-81A0A1U7WYF4_NICSY; zinc finger protein ZAT11-like
STRINGXP_009779270.11e-81(Nicotiana sylvestris)
STRINGXP_009779271.11e-81(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36624150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.15e-31C2H2 family protein