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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Niben101Scf01497g03017.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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| Family | Nin-like | ||||||||
| Protein Properties | Length: 304aa MW: 35206.8 Da PI: 5.967 | ||||||||
| Description | Nin-like family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | RWP-RK | 83 | 2.9e-26 | 197 | 246 | 3 | 52 |
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52
+++ ledl+kyF+lpi +A+k+L+++lTvLK++CR++GI+RWPhRkiksl
Niben101Scf01497g03017.1 197 SRLALEDLAKYFDLPIVEASKSLKIGLTVLKKKCREFGIPRWPHRKIKSL 246
5799********************************************97 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS51519 | 19.384 | 181 | 266 | IPR003035 | RWP-RK domain |
| Pfam | PF02042 | 5.1E-22 | 199 | 246 | IPR003035 | RWP-RK domain |
| Sequence ? help Back to Top |
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| Protein Sequence Length: 304 aa Download sequence Send to blast |
MASSKNRTLT ALVIFQNFLY PVMFRSVHVY RTGGGNEEME EREYLFHETS NFEETGFAPV 60 ITLHKFDVSA QFVGIENGVW KCMFVYDSGR HRSNNTNASP EWLSFAENPK MEFIPTLAND 120 LHAISELALN VEFRKSSGRS TTEESGGNNI KSNQLDVKRR VPFLDLNSLP YSDSDIEEND 180 QNGSENKKRR AATKDISRLA LEDLAKYFDL PIVEASKSLK IGLTVLKKKC REFGIPRWPH 240 RKIKSLDSLI HDLQEEMQRQ QEEDELAAIA VEERKRMIEY ERESIEKKPF MDIQKETKIF 300 RQDI |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_016509390.1 | 0.0 | PREDICTED: protein RKD5-like isoform X1 | ||||
| Refseq | XP_016509391.1 | 0.0 | PREDICTED: protein RKD5-like isoform X1 | ||||
| Refseq | XP_016509392.1 | 0.0 | PREDICTED: protein RKD5-like isoform X1 | ||||
| Refseq | XP_018625314.1 | 0.0 | PREDICTED: protein RKD5 isoform X1 | ||||
| Refseq | XP_018625315.1 | 0.0 | PREDICTED: protein RKD5 isoform X1 | ||||
| Refseq | XP_018625316.1 | 0.0 | PREDICTED: protein RKD5 isoform X1 | ||||
| Refseq | XP_018625317.1 | 0.0 | PREDICTED: protein RKD5 isoform X1 | ||||
| Refseq | XP_018625318.1 | 0.0 | PREDICTED: protein RKD5 isoform X1 | ||||
| TrEMBL | A0A1S4D7H3 | 0.0 | A0A1S4D7H3_TOBAC; protein RKD5-like isoform X1 | ||||
| STRING | XP_009597270.1 | 0.0 | (Nicotiana tomentosiformis) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA14425 | 7 | 9 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G35590.1 | 6e-62 | RWP-RK domain-containing protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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