PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01498g06001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 214aa    MW: 24860.8 Da    PI: 6.7232
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01498g06001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM32.42.6e-103611655128
                       NAM  55 ekewyfFskrdkkyatgkrknr.atksgyWkatgkdkevlsk......kgel..vglkktLvfykg..rapkgektdWvmheyrl 128
                               ++  yf +k ++k  ++ r +r + ++g+Wk+  kdk+v+ k      +  +  +g k+ L + ++    ++ +  +W+m+ey+l
  Niben101Scf01498g06001.1  36 TNYRYFITKLKEK--SNARYHRsVGNKGTWKQEAKDKPVHYKnmgntsS--VvnIGSKTCLSYKNKkfYPEDQKDGHWLMKEYEL 116
                               2233555554444..45677775888**************996655433..156*********95522455566789******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100516.2121139IPR003441NAC domain
SuperFamilySSF1019411.44E-835137IPR003441NAC domain
PfamPF023651.1E-639116IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MHDSGFITTN VDVYGKQERW EIYDNGVPNG DDYDSTNYRY FITKLKEKSN ARYHRSVGNK  60
GTWKQEAKDK PVHYKNMGNT SSVVNIGSKT CLSYKNKKFY PEDQKDGHWL MKEYELSKVI  120
VHKFDQDRRD YVLCAIKKLK HFNSTSETST TTTMLNFDQS VLPDMRSNSA HVVYSEVADH  180
MTYMSQINSK KVPEDVLGLD PWDIMVSDEL EDVP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009795944.11e-128PREDICTED: protein ATAF2-like
TrEMBLA0A1J6IHC91e-129A0A1J6IHC9_NICAT; Uncharacterized protein
STRINGXP_009795944.11e-127(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22191254