PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf01518g00011.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 275aa MW: 30416 Da PI: 6.6253

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf01518g00011.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	25.2	3e-08	166	213	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN+++ L+el+P + k + a +L ++Y++sLq Niben101Scf01518g00011.1 166 SHSLAERLRREKINEKLRCLQELVPGC----YKTMGMAVMLDVIINYVRSLQ 213 8*************************8....355888888888888888887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.53E-16	160	230	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.43E-10	160	216	No hit	No description
PROSITE profile	PS50888	15.231	162	212	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.2E-15	162	223	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.3E-5	166	213	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.3E-7	168	218	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MGDHSRFQAL NSSSSSSPFM NSNNMELLNS INLEAENFSS NINQHGFLAL SSEDFSNHHQ 60 LPNMAFHADM NISNSISTQN IYDPAAAQFF TLGGPSSYGC SSNMNSIPDQ SESILNNNIP 120 TSPSLVSGTA KSCEVRKRKR NNQKEAAEKP REVVHVRAKR GQATDSHSLA ERLRREKINE 180 KLRCLQELVP GCYKTMGMAV MLDVIINYVR SLQNQIDFLS MKLSAASLFY DFNSSEMDDM 240 DSMQGTKGYA AQGMGKIVGE GYGGFPPQFQ TSWPL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009779032.1	1e-177	PREDICTED: transcription factor bHLH75-like
TrEMBL	A0A1U7WGF5	1e-176	A0A1U7WGF5_NICSY; transcription factor bHLH75-like
STRING	XP_009779032.1	1e-176	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9069	17	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25330.1	5e-59	bHLH family protein