PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01518g08004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 420aa    MW: 47207.3 Da    PI: 4.5021
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01518g08004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.61.7e-19186235154
                       AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                               s+ykGVr++k +g+W+AeIrd +     + +r++lg++ taeeA +a++  r+++e
  Niben101Scf01518g08004.1 186 SKYKGVRQRK-WGKWAAEIRDpF-----KgRRVWLGTYSTAEEASRAYELKRLEFE 235
                               89*******9.**********55.....45**********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.9E-17186234IPR016177DNA-binding domain
CDDcd000187.96E-25186227No hitNo description
PfamPF008473.7E-13186235IPR001471AP2/ERF domain
SMARTSM003805.2E-21187251IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-22187243IPR001471AP2/ERF domain
PROSITE profilePS5103220.758187245IPR001471AP2/ERF domain
PRINTSPR003679.2E-10188199IPR001471AP2/ERF domain
PRINTSPR003679.2E-10210226IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MSARSALSLI EFGAPLNLCF SVSSLFFALC LQFSPIISMG LRPKRNWFGE VCFGGFHIKQ  60
FLHLILLLRP PLTLYTAMFE PERLFSSDLE NLKRNMKEKT DTYRKMRKIR IVCYDPDATD  120
SSDDEWINYP KSKCFVREIK LQIGNSFSSP KASETECSFQ DSNNGEKKPK QKVLAKPLIQ  180
PRQGLSKYKG VRQRKWGKWA AEIRDPFKGR RVWLGTYSTA EEASRAYELK RLEFESMAKN  240
STNMSQKSSD YQNQTNTNVA SIPEDSAESS ASRTSHSLPS SVLELDSLTS ASASAPISGL  300
NGYEKASDVA LEANVVEQEV PELALMEETL SLAQIGETMD LELELEPFLI GADDFSQHLD  360
EFVIDDFEDP PVCVIEGDDQ LPTGLPDFDF NFDFDGYDES FGLMDDAPRM NGTPLDIACP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-131872281456Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019240348.10.0PREDICTED: ethylene-responsive transcription factor ERF118-like
TrEMBLA0A1J6JT020.0A0A1J6JT02_NICAT; Ethylene-responsive transcription factor erf119
STRINGXP_009602361.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29572351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.21e-27ERF family protein