PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf01521g16002.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HD-ZIP

Protein Properties

Length: 127aa MW: 14851.7 Da PI: 7.7334

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf01521g16002.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	44.6	2.4e-14	55	87	24	56
S--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 24 ypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++ +e++ +LA+ lgL+ rq+ +WFqNrRak+k Niben101Scf01521g16002.1 55 KVEEERKMQLARALGLQPRQIAIWFQNRRAKWK 87 678999**************************9 PP
2	HD-ZIP_I/II	98.6	6e-32	48	123	16	91
HD-ZIP_I/II 16 esFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 + + +k+e erK++lar+Lglqprq+a+WFqnrRA++ktkqlEkdy++Lkr+++a+k+en++L +++++L++e+ Niben101Scf01521g16002.1 48 DLSNDGNKVEEERKMQLARALGLQPRQIAIWFQNRRAKWKTKQLEKDYDVLKRQFEAVKAENDSLLAHNQKLHAEV 123 4445678*****************************************************************9886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	2.0E-9	25	93	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	5.8E-15	54	97	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.67E-13	54	98	IPR009057	Homeodomain-like
Pfam	PF00046	9.8E-12	55	87	IPR001356	Homeobox domain
CDD	cd00086	5.36E-10	58	90	No hit	No description
PROSITE profile	PS50071	12.843	58	89	IPR001356	Homeobox domain
PRINTS	PR00031	2.2E-6	60	69	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	64	87	IPR017970	Homeobox, conserved site
PRINTS	PR00031	2.2E-6	69	85	IPR000047	Helix-turn-helix motif
Pfam	PF02183	2.9E-15	89	123	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 127 aa Download sequence Send to blast
MPFFPPNVML HTPHQDFQGS GSFLGKRTMS FSGMEANNNC EKNHEEEDLS NDGNKVEEER 60 KMQLARALGL QPRQIAIWFQ NRRAKWKTKQ LEKDYDVLKR QFEAVKAEND SLLAHNQKLH 120 AEVWPNQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269\|PubMed:11292072}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019246111.1	1e-68	PREDICTED: homeobox-leucine zipper protein ATHB-13-like
Swissprot	Q8LC03	3e-40	ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBL	A0A1J6IHB8	2e-67	A0A1J6IHB8_NICAT; Homeobox-leucine zipper protein athb-13
STRING	XP_009794845.1	9e-58	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69780.1	1e-42	HD-ZIP family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ribone PA,Capella M,Chan RL Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development. J. Exp. Bot., 2015. 66(19): p. 5929-43 [PMID:26136262] Wang X, et al. Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana. Sci China Life Sci, 2018. 61(1): p. 79-87 [PMID:28887625] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]