PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf01523g00019.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Dof

Protein Properties

Length: 237aa MW: 26573.8 Da PI: 9.1874

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf01523g00019.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	127.6	3.7e-40	40	101	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 k++al+cprC+stntkfCyynnyslsqPryfCk+CrryWt+GG+lrn+PvGgg+rknkksss Niben101Scf01523g00019.1 40 KDQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTAGGSLRNIPVGGGSRKNKKSSS 101 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-26	28	89	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.7E-34	41	98	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.161	44	98	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	46	82	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MDTAQWPQEI VVKPMEEIIQ NTNGSSKPNS CVERKVRQQK DQALNCPRCN STNTKFCYYN 60 NYSLSQPRYF CKTCRRYWTA GGSLRNIPVG GGSRKNKKSS SNSSSYSNHV NNPLKKLPDL 120 INQPSLNHDQ NPNKIHIEGS QDLNLGFSSD FKTITELIQV PNYDGNNKDN NSPSISPLPP 180 PPPPSSSSSV SSSSQLSALE LINGITSRGM NNNSFMSMPM EIIFKRQIQV EDFYFLL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009766033.1	1e-115	PREDICTED: dof zinc finger protein DOF4.6-like
Refseq	XP_016469483.1	1e-115	PREDICTED: dof zinc finger protein DOF4.6-like
Swissprot	Q8LAP8	9e-51	DOF46_ARATH; Dof zinc finger protein DOF4.6
TrEMBL	A0A1S3ZYQ1	1e-114	A0A1S3ZYQ1_TOBAC; dof zinc finger protein DOF4.6-like
TrEMBL	A0A1U7VI71	1e-114	A0A1U7VI71_NICSY; dof zinc finger protein DOF4.6-like
STRING	XP_009766033.1	1e-114	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64620.1	4e-46	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]