PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01524g00017.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 226aa    MW: 26471.5 Da    PI: 4.7767
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01524g00017.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.41.2e-182878656
                              S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                  Homeobox  6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                              +ft+eq++ Le++F+ + ++  +++ +LA+ lgL+ rqV +WFqN+Ra++k
  Niben101Scf01524g00017.1 28 RFTDEQVKLLESMFRLETKLEPRKKLQLARDLGLQPRQVAIWFQNKRARWK 78
                              7*************************************************9 PP
2HD-ZIP_I/II116.61.4e-3726115392
               HD-ZIP_I/II   3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 
                                +r+++eqvklLE++F+ e+kLep++K +lar+Lglqprqva+WFqn+RAR+ktkqlE++y +Lk+++d+l+ + ++L++e+e+L
  Niben101Scf01524g00017.1  26 GKRFTDEQVKLLESMFRLETKLEPRKKLQLARDLGLQPRQVAIWFQNKRARWKTKQLENEYIVLKAKFDHLNMQFQSLKTEKERL 110
                               58*********************************************************************************** PP

               HD-ZIP_I/II  88 reelk 92 
                                 +l+
  Niben101Scf01524g00017.1 111 LIQLE 115
                               98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.49E-181582IPR009057Homeodomain-like
PROSITE profilePS5007116.8272080IPR001356Homeobox domain
SMARTSM003891.9E-152284IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.9E-192786IPR009057Homeodomain-like
PfamPF000464.2E-162878IPR001356Homeobox domain
CDDcd000866.69E-132881No hitNo description
PRINTSPR000311.6E-55160IPR000047Helix-turn-helix motif
PROSITE patternPS0002705578IPR017970Homeobox, conserved site
PRINTSPR000311.6E-56076IPR000047Helix-turn-helix motif
PfamPF021835.8E-1180121IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MEPEESQELK ISKSSNSLKK KSSENGKRFT DEQVKLLESM FRLETKLEPR KKLQLARDLG  60
LQPRQVAIWF QNKRARWKTK QLENEYIVLK AKFDHLNMQF QSLKTEKERL LIQLELLNDQ  120
LENNVARGSR SEDLKDNELY TSSENGGTEL ELKDSPGCSN ARIDHKRIKE DQDDDTAEET  180
DKYFTPKEEA EFWNLEELGD NSLEQWCVGL GSSFNQSCNK SELWDF
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00650PBMTransfer from LOC_Os09g35910Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019232295.11e-152PREDICTED: homeobox-leucine zipper protein ATHB-7-like
TrEMBLA0A1J6KHK41e-150A0A1J6KHK4_NICAT; Homeobox-leucine zipper protein athb-7
STRINGXP_009798092.11e-150(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20412363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.21e-35homeobox 7