PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf01539g00001.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

ERF

Protein Properties

Length: 243aa MW: 27250.5 Da PI: 9.3261

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf01539g00001.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	58.6	1.5e-18	60	110	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr ++ +g+Wv+eIr+p++ + r++lg++ t+e+Aa+a++ a++++++ Niben101Scf01539g00001.1 60 PVYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTYSTPEMAARAHDVAALSIKK 110 68***998.******843...6********************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	7.7E-13	60	110	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	22.392	61	118	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	7.7E-30	61	119	IPR001471	AP2/ERF domain
SMART	SM00380	5.7E-33	61	124	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.62E-20	61	119	IPR016177	DNA-binding domain
CDD	cd00018	4.68E-29	62	120	No hit	No description
PRINTS	PR00367	4.6E-10	62	73	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.6E-10	84	100	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
KSEQSKYTQS HTDFFFSSSS VLTFNKYSHS SKKAYINQKI HSRMTKRKIK QSANTGNRHP 60 VYRGVRMRSW GKWVSEIREP RKKSRIWLGT YSTPEMAARA HDVAALSIKK NSSILNFPHL 120 VNSLPRPISL SPRDVQVAAA KAASMEEPPI SSISSSNSSS SSDCTLETIT SASDVELGEI 180 IELPSLEGSF DLNESKTELR LSDSVDGWLC APWWAPDSDF GEYLLEQDAV GESLIRSNFE 240 RQK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	3e-19	54	122	7	76	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019240476.1	1e-122	PREDICTED: dehydration-responsive element-binding protein 3-like
Swissprot	Q9LYD3	8e-57	DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBL	A0A1J6KLY8	1e-121	A0A1J6KLY8_NICAT; Dehydration-responsive element-binding protein 3
STRING	XP_009776195.1	1e-117	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA212	24	225

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11590.1	3e-58	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Galuschka C,Schindler M,Bülow L,Hehl R AthaMap web tools for the analysis and identification of co-regulated genes. Nucleic Acids Res., 2007. 35(Database issue): p. D857-62 [PMID:17148485]