PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf01571g00012.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

BBR-BPC

Protein Properties

Length: 309aa MW: 34478.5 Da PI: 9.7688

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf01571g00012.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	312.2	1.7e-95	1	309	1	301
GAGA_bind 1 mdddgsrernkgyyepa.aslkenlglqlmssiaerdaki..rernlalsekkaavaerd......................... 57 md +g++ rn+g++epa + lk +lglqlmss+ e+ r++++ ++++++++++ Niben101Scf01571g00012.1 1 MDGNGMNIRNWGFFEPAaTVLKGHLGLQLMSSMDEKPLFGniRDNHH--HHNHQTHQPHHptamestnggafhhhrvcgisetpm 83 88888877******9999*********76654334433333..4444444333344477788999999999***9 PP GAGA_bind 58 .maflqrdkalaernkalverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaa 141 +++ ++d+++++ + ++k+l++l ++ + +g++ l++t+s++s+q +++p+l + + +le+l +e+ Niben101Scf01571g00012.1 84 pIEY-MKDSWVNH-----KDFRDKYLNVLSGNH----HYLMGYGFLPETSSAQSMQIHEQPNLVKVEPD----PQLEELCLERDI 154 9899.99*9.....455788998888555....67799***********888777666555....344556666666 PP GAGA_bind 142 eeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWG 226 +k+ k+q k+pk+kkakk+++ ++ ++ +s +r++a++k+ ++v+ng+++D+s +P+PvCsCtGa +qCY+WG Niben101Scf01571g00012.1 155 GGLAKKRGAGKSQLLKSPKSKKAKKATRV---PNVES-CPSI-PRARAPRKNAEVVINGITMDISVIPIPVCSCTGAAQQCYRWG 234 66777777777888888888888887774...43333.3443.79************************************ PP GAGA_bind 227 nGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 +GGWqSaCCtt++S yPLP++tkrrg+RiagrKmS gaf+k+LekLa +Gy++sn++DLk +WAkHGtnkfvtir Niben101Scf01571g00012.1 235 CGGWQSACCTTNLSSYPLPMNTKRRGSRIAGRKMSLGAFTKVLEKLALDGYNFSNAIDLKPYWAKHGTNKFVTIR 309 ************************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	1.3E-144	1	309	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	2.8E-99	2	309	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MDGNGMNIRN WGFFEPAATV LKGHLGLQLM SSMDEKPLFG NIRDNHHHHN HQTHQPHHPT 60 AMESTNGGAF HHHRVCGISE TPMPIEYMKD SWVNHKDFRD KYLNVLSGNH HYLMGYGFLP 120 ETSSAQSMQI HEQPNLVKVE PDPQLEELCL ERDIGGLAKK RGAGKSQLLK SPKSKKAKKA 180 TRVPNVESCP SIPRARAPRK NAEVVINGIT MDISVIPIPV CSCTGAAQQC YRWGCGGWQS 240 ACCTTNLSSY PLPMNTKRRG SRIAGRKMSL GAFTKVLEKL ALDGYNFSNA IDLKPYWAKH 300 GTNKFVTIR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009761371.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE2-like
Refseq	XP_009761378.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE2-like
Refseq	XP_016499158.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE2-like
Refseq	XP_016499159.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE2-like
TrEMBL	A0A1S4CDX5	0.0	A0A1S4CDX5_TOBAC; protein BASIC PENTACYSTEINE2-like
TrEMBL	A0A1U7V4R1	0.0	A0A1U7V4R1_NICSY; protein BASIC PENTACYSTEINE2-like
STRING	XP_009761371.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10048	20	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14685.3	4e-81	basic pentacysteine 2