PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01582g13009.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LSD
Protein Properties Length: 145aa    MW: 15262.8 Da    PI: 7.7286
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01582g13009.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD142.11.4e-132852125
                   zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                              C+gCr+lL YP GA+sV+Ca+C+++
  Niben101Scf01582g13009.1 28 CSGCRNLLLYPVGATSVCCAVCNAI 52
                              ***********************97 PP
2zf-LSD143.93.8e-146791125
                   zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                              CggC+tlL+Y r A+sV+C++C+tV
  Niben101Scf01582g13009.1 67 CGGCHTLLMYIREATSVQCSCCHTV 91
                              ************************9 PP
3zf-LSD141.91.7e-13105129125
                   zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                               Cg+Cr lL+Y +GA+sV+Ca+C++V
  Niben101Scf01582g13009.1 105 CGNCRMLLMYQYGARSVKCAVCNFV 129
                               ***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.90.10.101.8E-421126No hitNo description
TIGRFAMsTIGR010531.2E-122555IPR005735Zinc finger, LSD1-type
SuperFamilySSF486954.19E-528126IPR011031Multihaem cytochrome
PfamPF069431.0E-102852IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010536.2E-136493IPR005735Zinc finger, LSD1-type
PfamPF069431.5E-116791IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010532.9E-12102132IPR005735Zinc finger, LSD1-type
PfamPF069431.0E-12105129IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009814Biological Processdefense response, incompatible interaction
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:2000121Biological Processregulation of removal of superoxide radicals
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MPVPLAPYPT PPTPFTPPTN GTQSQLVCSG CRNLLLYPVG ATSVCCAVCN AITAVPPPGT  60
EMAQLVCGGC HTLLMYIREA TSVQCSCCHT VNLAMEANQV AHVNCGNCRM LLMYQYGARS  120
VKCAVCNFVT AVGVSTSTTE QKLNS
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028109937.12e-92protein LOL1 isoform X1
RefseqXP_028109938.12e-92protein LOL1 isoform X1
RefseqXP_028109939.12e-92protein LOL1 isoform X1
SwissprotQ93ZB12e-79LOL1_ARATH; Protein LOL1
TrEMBLA0A2R6PIN92e-90A0A2R6PIN9_ACTCH; Uncharacterized protein
STRINGcassava4.1_018557m4e-91(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16792467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.13e-80lsd one like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]