PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01594g02012.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 195aa    MW: 23168.1 Da    PI: 4.3862
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01594g02012.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM99.64.6e-3191271128
                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                               +ppGf F+Ptdeel+++yLk kv+g ++  +  i+ +di +++P+++++k+  ++++wyfFs+         ++nrat++gyWk+
  Niben101Scf01594g02012.1   9 VPPGFCFDPTDEELIMYYLKSKVTGLPFYPSINIPYIDISSSHPSEINEKALWSKNQWYFFSQV--------KENRATRKGYWKE 85 
                               69*************************888788**************977777899*****997........45899******** PP

                       NAM  86 tgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                  +++++    +++ vg+kk +v+y+ +    ++t+W+m+e++l
  Niben101Scf01594g02012.1  86 VHMNEPIILGnfGEKMVGIKKYFVYYNID---EVQTNWIMEEFHL 127
                               *******998888999**********544...467********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.85E-387152IPR003441NAC domain
PROSITE profilePS5100536.3239154IPR003441NAC domain
PfamPF023653.0E-2310127IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MEDERVIGVP PGFCFDPTDE ELIMYYLKSK VTGLPFYPSI NIPYIDISSS HPSEINEKAL  60
WSKNQWYFFS QVKENRATRK GYWKEVHMNE PIILGNFGEK MVGIKKYFVY YNIDEVQTNW  120
IMEEFHLSIS NSFKKPSKKR ENEMEWVLCR VHESNNQTQG INWLYRNCDD EVELSALDEV  180
FLSMDDDEEE EISFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-21715915170NO APICAL MERISTEM PROTEIN
1ut4_B3e-21715915170NO APICAL MERISTEM PROTEIN
1ut7_A3e-21715915170NO APICAL MERISTEM PROTEIN
1ut7_B3e-21715915170NO APICAL MERISTEM PROTEIN
3swm_A2e-21715918173NAC domain-containing protein 19
3swm_B2e-21715918173NAC domain-containing protein 19
3swm_C2e-21715918173NAC domain-containing protein 19
3swm_D2e-21715918173NAC domain-containing protein 19
3swp_A2e-21715918173NAC domain-containing protein 19
3swp_B2e-21715918173NAC domain-containing protein 19
3swp_C2e-21715918173NAC domain-containing protein 19
3swp_D2e-21715918173NAC domain-containing protein 19
3ulx_A3e-21715713171Stress-induced transcription factor NAC1
4dul_A3e-21715915170NAC domain-containing protein 19
4dul_B3e-21715915170NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019246639.11e-128PREDICTED: NAC domain-containing protein 104-like
TrEMBLA0A1S4BYV51e-125A0A1S4BYV5_TOBAC; NAC domain-containing protein 104-like
TrEMBLA0A1U7XJZ31e-125A0A1U7XJZ3_NICSY; NAC transcription factor NAM-B2-like
STRINGXP_009792377.11e-125(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA137851215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.15e-39xylem NAC domain 1