PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01605g00004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 156aa    MW: 17553 Da    PI: 10.7331
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01605g00004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY32.32e-10131150322
                               -SS-EEEEEEE--TT-SS-E CS
                      WRKY   3 DgynWrKYGqKevkgsefpr 22 
                               D+++WrKYGqK++kgs++pr
  Niben101Scf01605g00004.1 131 DKWAWRKYGQKPIKGSPYPR 150
                               99*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-8122150IPR003657WRKY domain
PROSITE profilePS5081112.725124150IPR003657WRKY domain
SuperFamilySSF1182901.96E-7128151IPR003657WRKY domain
PfamPF031063.3E-6131151IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MEADWDLHAV VRGCTAAAAT NTTTSSSSSS NSTITTISSS TNVHQVDNFI CFQDSFEPKR  60
FIIGGLHNLK QQQKQHNHQL ITGLVQPKHF TTSKTSTSRR TSYAQMSPRF QKRKNKLKKV  120
CQVPAEALSL DKWAWRKYGQ KPIKGSPYPR LVPCMN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016446123.15e-74PREDICTED: WRKY transcription factor 22-like
TrEMBLA0A1S3Y1M31e-72A0A1S3Y1M3_TOBAC; WRKY transcription factor 22-like
STRINGXP_009588575.13e-71(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.11e-15WRKY family protein