PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01623g04023.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family FAR1
Protein Properties Length: 333aa    MW: 39670 Da    PI: 8.7446
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01623g04023.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR133.71.2e-103682890
                      FAR1 28 itkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90
                              i++r++vC +  +++++k ++++++r r+++r +C+ak+ v ke    +   +v  +++ HnHel 
  Niben101Scf01623g04023.1  3 IYSRDYVCHRADSPRPQKIAEKERQRDRKSSRYNCNAKMCVAKEIidgTTYCMVVYVDNVHNHELL 68
                              789****************9999999****************9988534445688999******96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-7368IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MGIYSRDYVC HRADSPRPQK IAEKERQRDR KSSRYNCNAK MCVAKEIIDG TTYCMVVYVD  60
NVHNHELLND KEVKFLMLIE VLILLIKRGL HFLQKLDGID VGQLPFTEKD IKNFIQSQSS  120
IDIEYDALEL LKICKSLKYK DVDFQYEFTS FVRLMNGKYS KIILTDQDLD LIERSLMNCL  180
SQNMPSVWHL TSKFSTWFSF ALGSRYLQFK YEFLRLYEIG SIEEFECQWD KLIIRFDLEL  240
NRHIKLLYEN RASWALPYLK GYVGTTVSIR NHANKEATMR QKYSIRVLNA HNYFMLSEKY  300
LLARWRQENL LVLKFSHVMK LSKDDNEFQI FNL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009784426.12e-89PREDICTED: protein FAR1-RELATED SEQUENCE 11-like
TrEMBLA0A1U7X4164e-88A0A1U7X416_NICSY; protein FAR1-RELATED SEQUENCE 11-like
STRINGXP_009784426.16e-89(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7183722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.14e-30FAR1-related sequence 10