PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01623g09005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 110aa    MW: 12087.2 Da    PI: 10.2979
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01623g09005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.12.9e-191751135
                      GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                              Cs C+tt TplWR+gp g+k+LCnaCG++y kk++
  Niben101Scf01623g09005.1 17 CSDCHTTRTPLWRSGPAGPKSLCNACGIKYNKKRR 51
                              ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.4131146IPR000679Zinc finger, GATA-type
SMARTSM004017.9E-131170IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.42E-131251No hitNo description
CDDcd002027.82E-131669No hitNo description
Gene3DG3DSA:3.30.50.107.0E-161651IPR013088Zinc finger, NHR/GATA-type
PfamPF003204.7E-171751IPR000679Zinc finger, GATA-type
PROSITE patternPS0034401742IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 110 aa     Download sequence    Send to blast
MDLKEVKGSE VEKMKTCSDC HTTRTPLWRS GPAGPKSLCN ACGIKYNKKR RQLLGLDEGR  60
SDKGNKKRKI SGEKNGQSLK MKLMALGGKL REEEQAAILL MALSCGSVYA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14868KRRQLLGLDEGRSDKGNKKRK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019263042.12e-72PREDICTED: GATA transcription factor 16-like
SwissprotQ9FJ102e-28GAT16_ARATH; GATA transcription factor 16
TrEMBLA0A1J6J5I55e-71A0A1J6J5I5_NICAT; Gata transcription factor 16
STRINGXP_009758127.19e-67(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA85032229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.14e-25GATA transcription factor 16
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  2. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]