PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf01623g10008.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 609aa MW: 68959.4 Da PI: 6.3572

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf01623g10008.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65.6	1.3e-20	59	152	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkl 81 +fY+++A++ GFs+r+++++ + + it+r+f+C + g+++ + +++ k +r+r+++r+gC+a +++ k+ +w++t + Niben101Scf01623g10008.1 59 EFYCSFANQSGFSIRRHRTRGKdGVGRGITRRDFTCHRGGYPQLKPSEDGKLQRNRKSSRCGCQAFMRIVKRAdfnVPEWRITGF 143 6*************999887455667****************9***************98887676789** PP FAR1 82 eleHnHela 90 ++ HnHel Niben101Scf01623g10008.1 144 SNVHNHELL 152 *****96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.9E-18	59	152	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.4E-8	275	326	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.188	403	439	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.7E-8	404	437	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.5E-6	414	441	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 609 aa Download sequence Send to blast
MPEITSIAKE ISENGTDSSH DDIGTVEEMP EDAILSRQTS VNLVPFIGQR FVSQDAAYEF 60 YCSFANQSGF SIRRHRTRGK DGVGRGITRR DFTCHRGGYP QLKPSEDGKL QRNRKSSRCG 120 CQAFMRIVKR ADFNVPEWRI TGFSNVHNHE LLKSTEVQLL PAYCTMSPDD KSRICMFAKA 180 GMSVRQMLRL MELEKGVKLG CLPFTEVDVR NLLQSFRNVE QDNDPIDLLK MCKEMKDKDP 240 NFKYDYKIDC NNRLEHIAWS YASSMRLYEA FGDSIVFDTT HRLDAYDMLL GIWIGVDNHG 300 MHCFFGCVLL RDENLQSFSW ALKVARVVGA KDQAGGTHKV QRNVQKALLK TGSPIESHAA 360 TLLTPFAFSK LQEELVLAPQ YASLMVDESY FIVRHHTEMD GGYKVLWVPH EEFISCSCHN 420 FEFTGILCRH VLRVLSTNNC FHIPDQYLPM RWHECSSSLA KPALFSLPSD NTGKIQLLQS 480 MISTLITESV ETEEHLNVVC EEVSTVLSRI KGFLTTSNGG NAISYESPSD SLILAEVEDS 540 DGIGQSFACN PDEYINLAKL KERGSRDGLY HYRKRKHLSV LCCEQYGHDA SDCPMMEGED 600 LNGDRLGFL

Sequence ? help Back to Top

Protein Sequence Length: 609 aa Download sequence Send to blast

MPEITSIAKE ISENGTDSSH DDIGTVEEMP EDAILSRQTS VNLVPFIGQR FVSQDAAYEF  60
YCSFANQSGF SIRRHRTRGK DGVGRGITRR DFTCHRGGYP QLKPSEDGKL QRNRKSSRCG  120
CQAFMRIVKR ADFNVPEWRI TGFSNVHNHE LLKSTEVQLL PAYCTMSPDD KSRICMFAKA  180
GMSVRQMLRL MELEKGVKLG CLPFTEVDVR NLLQSFRNVE QDNDPIDLLK MCKEMKDKDP  240
NFKYDYKIDC NNRLEHIAWS YASSMRLYEA FGDSIVFDTT HRLDAYDMLL GIWIGVDNHG  300
MHCFFGCVLL RDENLQSFSW ALKVARVVGA KDQAGGTHKV QRNVQKALLK TGSPIESHAA  360
TLLTPFAFSK LQEELVLAPQ YASLMVDESY FIVRHHTEMD GGYKVLWVPH EEFISCSCHN  420
FEFTGILCRH VLRVLSTNNC FHIPDQYLPM RWHECSSSLA KPALFSLPSD NTGKIQLLQS  480
MISTLITESV ETEEHLNVVC EEVSTVLSRI KGFLTTSNGG NAISYESPSD SLILAEVEDS  540
DGIGQSFACN PDEYINLAKL KERGSRDGLY HYRKRKHLSV LCCEQYGHDA SDCPMMEGED  600
LNGDRLGFL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020247495.1	0.0	protein FAR1-RELATED SEQUENCE 11-like isoform X4
Swissprot	Q9SY66	1e-133	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A444ZF99	0.0	A0A444ZF99_ARAHY; Uncharacterized protein
STRING	XP_009599705.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10896	21	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	1e-135	FAR1-related sequence 11

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]