PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01626g02023.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 249aa    MW: 27202.2 Da    PI: 6.576
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01626g02023.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260122.32.5e-38391401101
                    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 
                               +C aCk+lrrkC ++C++ap++ ++q +++fa+vhk+FGasnv+kll ++p ++r+da+ +++yeA+ar++dPvyG+v++il+lq
  Niben101Scf01626g02023.1  39 PCGACKFLRRKCISGCIFAPHYGSDQgAARFAAVHKVFGASNVSKLLLHIPANRRHDAVVTITYEAQARLSDPVYGCVSTILALQ 123
                               7***********************9989********************************************************* PP

                    DUF260  85 qqleqlkaelallkeel 101
                               qq+++l++ela+++++l
  Niben101Scf01626g02023.1 124 QQVASLQTELAVVQTQL 140
                               ************99885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.53638140IPR004883Lateral organ boundaries, LOB
PfamPF031951.5E-3739137IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:1900150Biological Processregulation of defense response to fungus
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MDEPPNDGTS ENRRKGPGKR GTGAVEPLAT PALPASTAPC GACKFLRRKC ISGCIFAPHY  60
GSDQGAARFA AVHKVFGASN VSKLLLHIPA NRRHDAVVTI TYEAQARLSD PVYGCVSTIL  120
ALQQQVASLQ TELAVVQTQL INNRYAMENA LQTSQQQQHH LQQQQLHQEH RSAILQPTYS  180
NNSSVSTNNL INNINSANTF NSTAFDQLPD DTCATTVPNN SLSFDPIHQE DGEEEESHNP  240
IAFTNQMFH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-39291461115LOB family transfactor Ramosa2.1
5ly0_B1e-39291461115LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016510881.11e-141PREDICTED: LOB domain-containing protein 20-like
SwissprotQ9SRV36e-73LBD20_ARATH; LOB domain-containing protein 20
TrEMBLA0A1S4DBV11e-139A0A1S4DBV1_TOBAC; LOB domain-containing protein 20-like
STRINGXP_009779769.11e-133(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.11e-71LOB domain-containing protein 20