PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf01639g07001.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 503aa MW: 55695.1 Da PI: 8.5039

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf01639g07001.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.7	2.1e-05	93	115	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Niben101Scf01639g07001.1 93 FVCEICSKGFQRDQNLQLHRRGH 115 89*******************88 PP
2	zf-C2H2	11.5	0.0009	169	191	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ Niben101Scf01639g07001.1 169 WKCDKCSKIYAVQSDWKAHSKTC 191 58*****************9998 PP
3	zf-C2H2	12.6	0.00043	199	217	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg++Fsrk+++++H + Niben101Scf01639g07001.1 199 DCGTVFSRKDSFVTHRAFC 217 8**************8765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.93E-6	92	115	No hit	No description
Gene3D	G3DSA:3.30.160.60	6.0E-5	92	115	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.036	93	115	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.887	93	115	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	95	115	IPR007087	Zinc finger, C2H2
SMART	SM00355	260	134	164	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	3.5E-4	157	190	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.93E-6	164	189	No hit	No description
SMART	SM00355	180	169	189	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 503 aa Download sequence Send to blast
MNQEKQIYHQ NNSGCFSLLE SSSVLSHQAA MFSDEASVSS TTRVPNLSHA PQTISNHQQP 60 QKIKKKRSLP GNPDPDAEVI ALSPKTLLAT NRFVCEICSK GFQRDQNLQL HRRGHNLPWK 120 LKQRNNKENR KKAYVCPEPT CVHHHPSRAL GDLTGIKKHY CRKHGEKKWK CDKCSKIYAV 180 QSDWKAHSKT CGTREYRCDC GTVFSRKDSF VTHRAFCDAL AEESARLSAN SALMHRAAVA 240 SNTIPNSAAA TTESNFHLNQ SSPILFPFPT TNQRHFANPP PPPATVVTTH ITLNNPWDPQ 300 IPLNPNPTHH EENHNQMTHH PVPIKTESIH IPISSSVPAF YQDHFFHKGS FSIPSPQLSA 360 TALLQKAATI GTTHSAVSHV NSAMVHLNRT SLGHVTPRIS PEDFLGFGSD NMSNTWQQKS 420 ENLTRDFLGL TGDHDHDHES SANGNGRNGG LFVSYGGGGD GSGMDFQQTL YERDHSSVLT 480 HYQLGFGFAA TAAETVSETW GNC

Sequence ? help Back to Top

Protein Sequence Length: 503 aa Download sequence Send to blast

MNQEKQIYHQ NNSGCFSLLE SSSVLSHQAA MFSDEASVSS TTRVPNLSHA PQTISNHQQP  60
QKIKKKRSLP GNPDPDAEVI ALSPKTLLAT NRFVCEICSK GFQRDQNLQL HRRGHNLPWK  120
LKQRNNKENR KKAYVCPEPT CVHHHPSRAL GDLTGIKKHY CRKHGEKKWK CDKCSKIYAV  180
QSDWKAHSKT CGTREYRCDC GTVFSRKDSF VTHRAFCDAL AEESARLSAN SALMHRAAVA  240
SNTIPNSAAA TTESNFHLNQ SSPILFPFPT TNQRHFANPP PPPATVVTTH ITLNNPWDPQ  300
IPLNPNPTHH EENHNQMTHH PVPIKTESIH IPISSSVPAF YQDHFFHKGS FSIPSPQLSA  360
TALLQKAATI GTTHSAVSHV NSAMVHLNRT SLGHVTPRIS PEDFLGFGSD NMSNTWQQKS  420
ENLTRDFLGL TGDHDHDHES SANGNGRNGG LFVSYGGGGD GSGMDFQQTL YERDHSSVLT  480
HYQLGFGFAA TAAETVSETW GNC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	4e-35	165	231	3	69	Zinc finger protein JACKDAW
5b3h_F	4e-35	165	231	3	69	Zinc finger protein JACKDAW
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	119	131	KLKQRNNKENRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269\|PubMed:25035403}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009786203.1	0.0	PREDICTED: zinc finger protein NUTCRACKER-like
Refseq	XP_016477693.1	0.0	PREDICTED: protein indeterminate-domain 2-like
Swissprot	Q9SCQ6	1e-115	IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBL	A0A1S4AMN4	0.0	A0A1S4AMN4_TOBAC; protein indeterminate-domain 2-like
TrEMBL	A0A1U7X5S4	0.0	A0A1U7X5S4_NICSY; zinc finger protein NUTCRACKER-like
STRING	XP_009786203.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA103	24	350

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	1e-113	C2H2 family protein

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755] Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815]