PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf01670g05002.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 475aa MW: 53976.7 Da PI: 8.1509

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf01670g05002.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	102.2	5.1e-32	35	126	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtklele 84 fYn+YA++vGFs+r+s+s++s+++g i++r fvC keg+r+ ++k+ +++ +r+r+ tr+gCka l vk +++gkw+v+++++e Niben101Scf01670g05002.1 35 FYNSYARRVGFSTRVSSSRRSRKDGAIIQRSFVCAKEGFRNLNEKRtkDREIKRPRTITRVGCKAALSVKIQDSGKWVVSSFVKE 119 9*************************************998888545677889************************** PP FAR1 85 HnHelap 91 HnHel+p Niben101Scf01670g05002.1 120 HNHELVP 126 ***86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.1E-30	35	126	IPR004330	FAR1 DNA binding domain
Pfam	PF04434	6.6E-13	229	275	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	11.288	241	277	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	5.5E-10	252	279	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 475 aa Download sequence Send to blast
MSCFAAVRSY SPQGDLDLEP YEGLEFESEE AAKAFYNSYA RRVGFSTRVS SSRRSRKDGA 60 IIQRSFVCAK EGFRNLNEKR TKDREIKRPR TITRVGCKAA LSVKIQDSGK WVVSSFVKEH 120 NHELVPPDQV HCLRSHRQIS GPAKTLIDTL QAAGMGPRRI MSALIKEYGG ISKVGFTEVD 180 CLLKTPSPME KQASEVYTRK LFMRFQEELV GTLTFMANKV EDDGLVTTYQ VAKFGDDYRA 240 YYVRFNVLEM KATCSCQMFQ FSGLLCRHIL AVFRVTNVLT LPSHYILKRW SRSAKSSVAL 300 DDRVSDVINY YLESHTVRYN ILRHEAFKFV EEGAESVDSY AVAMAALEVA LNKVALAAKH 360 DGRISLVNGH CREYLTRNGV HANYNIEDEQ RSLACPLSEV ERFDMTFDAM GIDLSVDEDD 420 MDAKIQELSY LLDCANRKCE IYRANLYSVL KDIEDHKQQL SIKVQNIKLS LKDGL

Sequence ? help Back to Top

Protein Sequence Length: 475 aa Download sequence Send to blast

MSCFAAVRSY SPQGDLDLEP YEGLEFESEE AAKAFYNSYA RRVGFSTRVS SSRRSRKDGA  60
IIQRSFVCAK EGFRNLNEKR TKDREIKRPR TITRVGCKAA LSVKIQDSGK WVVSSFVKEH  120
NHELVPPDQV HCLRSHRQIS GPAKTLIDTL QAAGMGPRRI MSALIKEYGG ISKVGFTEVD  180
CLLKTPSPME KQASEVYTRK LFMRFQEELV GTLTFMANKV EDDGLVTTYQ VAKFGDDYRA  240
YYVRFNVLEM KATCSCQMFQ FSGLLCRHIL AVFRVTNVLT LPSHYILKRW SRSAKSSVAL  300
DDRVSDVINY YLESHTVRYN ILRHEAFKFV EEGAESVDSY AVAMAALEVA LNKVALAAKH  360
DGRISLVNGH CREYLTRNGV HANYNIEDEQ RSLACPLSEV ERFDMTFDAM GIDLSVDEDD  420
MDAKIQELSY LLDCANRKCE IYRANLYSVL KDIEDHKQQL SIKVQNIKLS LKDGL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009758605.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5
Refseq	XP_016461330.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_019263777.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5
Refseq	XP_019263778.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5
Swissprot	Q9SZL8	1e-100	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A1S3ZA49	0.0	A0A1S3ZA49_TOBAC; protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBL	A0A1U7V9U1	0.0	A0A1U7V9U1_NICSY; protein FAR1-RELATED SEQUENCE 5
STRING	XP_009758605.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA435	22	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-102	FAR1-related sequence 5

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]