PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01679g03017.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family DBB
Protein Properties Length: 266aa    MW: 28996.1 Da    PI: 4.3268
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01679g03017.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.32.3e-06344439
                  zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                              ++C++++  +   +C++++  lC +C ++ H+       H++
  Niben101Scf01679g03017.1  3 PVCELCGVARGVVYCKSDSARLCLQCDENVHSAnflsrrHSR 44
                              79*****999*********************65677777776 PP
2zf-B_box19.52e-064575333
                  zf-B_box  3 erkCpeHeekelqlfCedCqqllCedCllee 33
                                +C++++++++   C d + +lCe+C  +e
  Niben101Scf01679g03017.1 45 SLICDKCSSQPAVVRCMDEEICLCESCDWNE 75
                              679************************8665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.4E-10147IPR000315B-box-type zinc finger
PROSITE profilePS501199.143147IPR000315B-box-type zinc finger
CDDcd000217.07E-6347No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MDPVCELCGV ARGVVYCKSD SARLCLQCDE NVHSANFLSR RHSRSLICDK CSSQPAVVRC  60
MDEEICLCES CDWNENGCTG TGHRLKQWNP YNGSLSPTEF SRMLSEVLEI PVSNDTNFGS  120
FGTPCSSLSI NDNSSLGTKG NGGSLVANKL NELASNYKFD PWAIPSNLSY MTSYNRDPVP  180
VSEGSGLSKQ DCPIKDLGFQ EGDDLAKGVN FDDVTLSFDC GNYELLGSSQ QSHPIYSSED  240
KELDCLVMEK NSSLTGSNSH VETSLE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009787133.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 12-like isoform X1
RefseqXP_009787134.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 12-like isoform X1
RefseqXP_009787135.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 12-like isoform X1
RefseqXP_009787136.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 12-like isoform X1
RefseqXP_016461866.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 12-like
TrEMBLA0A1S3ZBT10.0A0A1S3ZBT1_TOBAC; zinc finger protein CONSTANS-LIKE 12-like
TrEMBLA0A1U7X8F30.0A0A1U7X8F3_NICSY; zinc finger protein CONSTANS-LIKE 12-like isoform X1
STRINGXP_009787133.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42311726
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21880.11e-52B-box type zinc finger protein with CCT domain