PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01682g01007.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 241aa    MW: 28355.5 Da    PI: 10.1124
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01682g01007.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.11.4e-29959151
                              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                              krien++nrqvt+skRrng++KKA+EL vLCda+v++i++sstgkl+e++s
  Niben101Scf01682g01007.1  9 KRIENQTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMISSTGKLHEFIS 59
                              79***********************************************86 PP
2K-box57.94.5e-2070135974
                     K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnelll 74 
                               l +++  ++q++l+kLk+ ++nLqre+R+++Ge+L++L+++ L++L +++++slk iR++K++ ++
  Niben101Scf01682g01007.1  70 LYQKTVGKMQEQLRKLKDVNKNLQREIRQRMGESLNDLNYEKLEELNENVDNSLKLIRERKDQAVV 135
                               55677889******************************************************9876 PP
3K-box52.22.7e-181371931571
                     K-box  15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKne 71 
                               +++q++l+kLk+ ++nLqre+R+++Ge+L++L+++ L++L +++++slk iR++K +
  Niben101Scf01682g01007.1 137 SKMQEQLRKLKDVNKNLQREIRQRMGESLNDLNYEKLEELNENVDNSLKLIRERKVR 193
                               589****************************************************76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.1E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.071161IPR002100Transcription factor, MADS-box
CDDcd002652.44E-36274No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-28323IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-31377IPR002100Transcription factor, MADS-box
PfamPF003196.1E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-283859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.32575163IPR002487Transcription factor, K-box
PfamPF014866.1E-1376134IPR002487Transcription factor, K-box
PfamPF014868.9E-12138195IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MARGKIQIKR IENQTNRQVT YSKRRNGLFK KANELTVLCD AKVSIIMISS TGKLHEFISP  60
SVTTKQLFDL YQKTVGKMQE QLRKLKDVNK NLQREIRQRM GESLNDLNYE KLEELNENVD  120
NSLKLIRERK DQAVVRSKMQ EQLRKLKDVN KNLQREIRQR MGESLNDLNY EKLEELNENV  180
DNSLKLIRER KVRNVEEIHR NLLLEFDARQ EDPYGLVEQE GDYNSVLGFP NGGARILALR  240
L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A8e-15162162MEF2C
5f28_B8e-15162162MEF2C
5f28_C8e-15162162MEF2C
5f28_D8e-15162162MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the genetic control of flower development. Necessary for the normal development of petals. Absence of the PMADS1 protein causes transformation of petals into sepals.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001312649.11e-111floral homeotic protein PMADS 1
RefseqXP_009794650.11e-111PREDICTED: floral homeotic protein PMADS 1
SwissprotQ074721e-108MADS1_PETHY; Floral homeotic protein PMADS 1
TrEMBLA0A1U7Y7581e-110A0A1U7Y758_NICSY; floral homeotic protein PMADS 1
TrEMBLQ405131e-110Q40513_TOBAC; MADS-box protein
STRINGXP_009794650.11e-111(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23142451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.13e-59MIKC_MADS family protein
Publications ? help Back to Top
  1. Immink RG, et al.
    Analysis of the petunia MADS-box transcription factor family.
    Mol. Genet. Genomics, 2003. 268(5): p. 598-606
    [PMID:12589434]
  2. Kush A,Brunelle A,Shevell D,Chua NH
    The cDNA sequence of two MADS box proteins in Petunia.
    Plant Physiol., 1993. 102(3): p. 1051-2
    [PMID:8278527]