PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf01683g14005.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

WRKY

Protein Properties

Length: 224aa MW: 25685.9 Da PI: 9.1514

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf01683g14005.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	103.7	1e-32	147	205	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+versaedp++v++tYeg+H h+ Niben101Scf01683g14005.1 147 LDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERSAEDPTMVITTYEGRHVHS 205 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	5.3E-34	132	205	IPR003657	WRKY domain
SuperFamily	SSF118290	9.81E-29	140	205	IPR003657	WRKY domain
PROSITE profile	PS50811	29.252	142	207	IPR003657	WRKY domain
SMART	SM00774	6.1E-37	147	206	IPR003657	WRKY domain
Pfam	PF03106	1.7E-25	148	204	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MFSQSLFEDQ ADMSSQIGFF TFPPNYNNNM GSAITTTLPF GLCNHKTLTI IPPSFAADNN 60 FLIESTSLRH KEDLTTTIFG GPHLLSLQKS TANTWAWGEV NESNNIKRSR DNIDDHLAIK 120 MKKVKSSRRK VREPRFCFKT LSDVDVLDDG YKWRKYGQKV VKNTQHPRSY YRCTQDNCRV 180 KKRVERSAED PTMVITTYEG RHVHSPSLDG EDSQASSQLN NLLW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-26	138	204	8	74	Probable WRKY transcription factor 4
2lex_A	1e-26	138	204	8	74	Probable WRKY transcription factor 4
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009630231.1	1e-159	PREDICTED: probable WRKY transcription factor 13 isoform X2
Refseq	XP_016480880.1	1e-159	PREDICTED: probable WRKY transcription factor 13
Refseq	XP_018634566.1	1e-159	PREDICTED: probable WRKY transcription factor 13 isoform X3
TrEMBL	A0A1S4AW95	1e-157	A0A1S4AW95_TOBAC; probable WRKY transcription factor 13
STRING	XP_009630231.1	1e-158	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10376	21	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39410.1	2e-48	WRKY DNA-binding protein 13