PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf01683g17031.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 178aa MW: 20865.2 Da PI: 9.3028

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf01683g17031.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	24.9	6.6e-08	60	112	37	90
FAR1 37 kegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++g ++ +++++ +++r++ e +gC a++k + +++w+v ++ eHnH++ Niben101Scf01683g17031.1 60 RKGAKTYNRNNELTRKRHKLEYICGCMARIKFMIS-NENWKVFEFFDEHNHPMI 112 67788888888667777777888888888888777.9**************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.5E-5	61	112	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
MFVSAEGSDY IANDQDCSTF FHNVSNINDY AIKIEMKFGS EDESYVAYNS YILAKGFDIR 60 KGAKTYNRNN ELTRKRHKLE YICGCMARIK FMISNENWKV FEFFDEHNHP MIKENLSHFI 120 FSGRNLTIAT KDILSSIVDT GIRTKKLFII FKMKQVVLKM LDLLKKILIT SHKHIKEE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019266793.1	1e-75	PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A1S3ZUA7	1e-73	A0A1S3ZUA7_TOBAC; Uncharacterized protein
STRING	XP_009771804.1	1e-72	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1726	9	31