PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01689g07011.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bZIP
Protein Properties Length: 197aa    MW: 22140.9 Da    PI: 9.5164
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01689g07011.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.95.8e-101867957
                              CHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHH CS
                    bZIP_1  9 rkqkNReAArrsRqRKkaeieeLe.ekvkeLeaeNkaLkkeleelkkeva 57
                              r+ +NRe+ArrsR+RK+a + eLe +k  e    N+ Lk  +e+l+ +v+
  Niben101Scf01689g07011.1 18 RMLSNRESARRSRRRKQAHLTELEtQKYNEAAVDNRVLKADVETLRAKVK 67
                              9**********************956899999999999999999988776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.9E-4875IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.05E-71667No hitNo description
Gene3DG3DSA:1.20.5.1701.1E-81671No hitNo description
PfamPF001705.8E-81767IPR004827Basic-leucine zipper domain
PROSITE patternPS0003601832IPR004827Basic-leucine zipper domain
PfamPF124983.7E-4461186IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MASLSGYNPN ILCQHIDRML SNRESARRSR RRKQAHLTEL ETQKYNEAAV DNRVLKADVE  60
TLRAKVKMAE ETVKRVTGLN PLFQAMSEIS TMMMPSFTGS PFDSSADAAV PEQDDPRHHY  120
YQAPENSHMP SHTPRMQNGM IDIPSMENAH QSSAAEAIGG NKIGRTSSMQ RVASLEHLQK  180
RMRGEASTCG TQRRKEQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12633RRSRRRKQ
22833SRRRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016476165.11e-123PREDICTED: light-inducible protein CPRF2-like
SwissprotQ990905e-64CPRF2_PETCR; Light-inducible protein CPRF2
TrEMBLA0A1S4AHI81e-122A0A1S4AHI8_TOBAC; light-inducible protein CPRF2-like
STRINGXP_009623820.11e-114(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29342444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28770.13e-30bZIP family protein
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]