PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01694g11001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 394aa    MW: 44695.1 Da    PI: 8.1089
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01694g11001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.36.2e-06136159123
                               EEETTTTEEESSHHHHHHHHHH.T CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                               y+C+ Cg++F ++ +L++H++  H
  Niben101Scf01694g11001.1 136 YPCTLCGEVFQSPIHLEQHQSIkH 159
                               99******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0026136159IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.221136164IPR007087Zinc finger, C2H2
PROSITE patternPS000280138159IPR007087Zinc finger, C2H2
SuperFamilySSF563992.3E-13161371No hitNo description
Gene3DG3DSA:3.90.228.107.1E-5174275IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MATVFRPLFS TFLSVIFLLL HLGCFIFSST SHNQPSKKRK LPSDHHSKNK ATKVISSSWS  60
YIKRIFSSKP DPIQKITTSP THHNPSIQSP CSSTRSLHKP IFPVTSDDPI TRSVYPVPES  120
DICADQLFFP LRNDIYPCTL CGEVFQSPIH LEQHQSIKHA VSELIDGDSG KNIVRIIFKT  180
GWPEKKNNPI IHQILKIHNS KRILTRFEDY REHVKFKASR NVVVKRDERC IADGNELLRF  240
HCTTFMCELG QNGNSSICNQ QYCSVCGIIK SGFSNKMDGI SVQPTSWRAH AAVPEEIEEE  300
FGFMNVKRAM LVCRVIAGRI GCDPDLADKE DPGFDSLVGR ENGAQSRLDE EDELLLFNPR  360
AVLPCFVIVY TVYMFLRLKS TSSHDHQRDT SPDE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019247573.10.0PREDICTED: uncharacterized protein LOC109227036
TrEMBLA0A1J6ICZ00.0A0A1J6ICZ0_NICAT; Uncharacterized protein
STRINGXP_009773098.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA118341821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.11e-108C2H2 family protein