PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01694g12010.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 244aa    MW: 28207.4 Da    PI: 8.4257
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01694g12010.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.42.8e-17108154148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                               +g WT eEd +lv++vkq+G + W+ Ia++m   R +kqc++rw+++l
  Niben101Scf01694g12010.1 108 KGQWTDEEDRKLVRLVKQFGERKWAQIAQKMY-ARAGKQCRERWHNHL 154
                               799****************************9.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.19103158IPR017930Myb domain
SuperFamilySSF466894.39E-17104161IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.0E-22107157IPR009057Homeodomain-like
SMARTSM007171.3E-12107156IPR001005SANT/Myb domain
PfamPF139217.8E-16111162No hitNo description
CDDcd001672.34E-14111154No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MESGSVFRLY QNLPKPRPPL TVIDRFSLSH ENYFYPFSGA NASSSSSSSH ANGISWPKSL  60
PDPSFIEGFF LNEQENGLIE DAKTVQENKK ESWKKEEKGN STKNYLVKGQ WTDEEDRKLV  120
RLVKQFGERK WAQIAQKMYA RAGKQCRERW HNHLLPDIKN KNGHRQRWEL HGDYNTKEVN  180
QQYHSQHYYC PDIYLSYFLD GSSYMMNEAA AGCSSGGNNK VEIDLMEMVS SSHLPKGAFN  240
NTFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-17106159558B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009592355.15e-93PREDICTED: myb-like protein Q
TrEMBLA0A314KYM79e-84A0A314KYM7_NICAT; Transcription factor myb98
STRINGXP_009592355.12e-92(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA48251941
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.13e-26myb domain protein 119