PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf01697g17008.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LSD

Protein Properties

Length: 145aa MW: 15167.7 Da PI: 7.9177

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf01697g17008.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	44.8	2e-14	28	52	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL YP+GA+sV+Ca+C+tV Niben101Scf01697g17008.1 28 CSGCRNLLLYPIGATSVCCAVCNTV 52 ************************9 PP
2	zf-LSD1	46.8	4.8e-15	67	91	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+tV Niben101Scf01697g17008.1 67 CGGCHTLLMYIRGATSVQCSCCHTV 91 ************************9 PP
3	zf-LSD1	38.4	2e-12	105	129	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+Y +GA+sV+Ca+C +V Niben101Scf01697g17008.1 105 CGNCRMLLMYQYGARSVKCAVCSFV 129 **********************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.90.10.10	3.4E-4	22	126	No hit	No description
TIGRFAMs	TIGR01053	7.1E-13	25	55	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	2.3E-11	28	52	IPR005735	Zinc finger, LSD1-type
SuperFamily	SSF48695	4.33E-5	28	126	IPR011031	Multihaem cytochrome
TIGRFAMs	TIGR01053	8.7E-15	64	93	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.3E-12	67	91	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	1.6E-11	102	132	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	7.0E-12	105	129	IPR005735	Zinc finger, LSD1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0034051	Biological Process	negative regulation of plant-type hypersensitive response
GO:0045595	Biological Process	regulation of cell differentiation

Sequence ? help Back to Top
Protein Sequence Length: 145 aa Download sequence Send to blast
MPVPLAPYPT PTTPFTPPAN GTQSQLVCSG CRNLLLYPIG ATSVCCAVCN TVTAVPPPGT 60 EMAQLVCGGC HTLLMYIRGA TSVQCSCCHT VNLAMEANQV AHVNCGNCRM LLMYQYGARS 120 VKCAVCSFVT AVGVSTSTTE QKLNS

Functional Description ? help Back to Top
Source	Description
UniProt	Positive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269\|PubMed:12732715}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028109937.1	9e-94	protein LOL1 isoform X1
Refseq	XP_028109938.1	9e-94	protein LOL1 isoform X1
Refseq	XP_028109939.1	9e-94	protein LOL1 isoform X1
Swissprot	Q93ZB1	9e-80	LOL1_ARATH; Protein LOL1
TrEMBL	A0A2R6PIN9	5e-92	A0A2R6PIN9_ACTCH; Uncharacterized protein
STRING	VIT_02s0012g00990.t01	1e-89	(Vitis vinifera)
STRING	cassava4.1_018557m	3e-90	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1679	24	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.3	1e-67	lsd one like 1

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]