PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01700g00004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 249aa    MW: 26483.1 Da    PI: 7.9122
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01700g00004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.00065105127123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               y C+ C+ksF +   L  H  +H
  Niben101Scf01700g00004.1 105 YNCSVCNKSFASYQALGGHKASH 127
                               89**********99998888877 PP
2zf-C2H212.40.0005156178123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               ++C++C+k F++   L  H r+H
  Niben101Scf01700g00004.1 156 HECSICHKYFPTGQALGGHKRRH 178
                               78*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.74E-7104178No hitNo description
PROSITE profilePS5015710.762105132IPR007087Zinc finger, C2H2
SMARTSM003550.021105127IPR015880Zinc finger, C2H2-like
PfamPF139122.4E-13105128IPR007087Zinc finger, C2H2
PROSITE patternPS000280107127IPR007087Zinc finger, C2H2
SMARTSM003550.19156178IPR015880Zinc finger, C2H2-like
PfamPF139122.5E-11156180IPR007087Zinc finger, C2H2
PROSITE profilePS501579.556156183IPR007087Zinc finger, C2H2
PROSITE patternPS000280158178IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MALESLNSPT KEPTPTTSPI YEQVNLDSST KGKRSKRPRS EIQPTEEEFL ALCLIMLARS  60
GGGRTNSTHH DTTIAAAAVQ QQKKQITNGS LSRQDQEALI EQHSYNCSVC NKSFASYQAL  120
GGHKASHRNK HSINTATTVS DDNSTSTSLN PSGRSHECSI CHKYFPTGQA LGGHKRRHYE  180
GKIIGGGAGS REAGGSLTVI SSEAGGSHTV ISSEAGGSHT VISSDFGGSA RTVRDFDLNL  240
PPPPEFSCD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009784655.11e-136PREDICTED: zinc finger protein ZAT10-like isoform X1
TrEMBLA0A1U7XDX61e-134A0A1U7XDX6_NICSY; zinc finger protein ZAT10-like isoform X1
STRINGXP_009784655.11e-135(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7352495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.11e-33salt tolerance zinc finger