PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01700g02004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 331aa    MW: 36910.1 Da    PI: 4.6399
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01700g02004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.31.7e-102572971055
                               HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               r+RR+riN+++ +L++l+P+      +K++ +++Le+Av Y+k Lq
  Niben101Scf01700g02004.1 257 RKRRERINERLRTLQTLIPNG-----TKVDISTMLEEAVLYVKFLQ 297
                               9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.9247296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.06E-13249312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-11252306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.2E-11253302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.17E-11256301No hitNo description
PfamPF000109.4E-8257297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MEPVASISGE WSSFSGMCLT DEADFMAQLL GNCSLPNELP CSSNFGGSSA YWTGHESNMI  60
MGGAREVSVD TSNDTNNSMY TDGSSFLLSP PCHENYYSSH PRPVLMRNDS SITMEHGLVD  120
TNNPSEADDF LNQDVSNDSM EFDENMPEAS FNGKGLQLGR TDYEQFSEDK MDSPSESSKK  180
RSRLHGLRHV PKNKRSAKLE KDLKSGEMDG NNKVVLQRQN STISCCSEDE SNVSNVLTRK  240
TRATTGSATD PQSLYARKRR ERINERLRTL QTLIPNGTKV DISTMLEEAV LYVKFLQLQI  300
KLLSSDDLWM YSPIAYNGMD IGLDLMIDIP K
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016435055.10.0PREDICTED: transcription factor bHLH139-like
TrEMBLA0A1S3X4Z40.0A0A1S3X4Z4_TOBAC; transcription factor bHLH139-like
STRINGXP_009602073.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA63922101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.14e-51bHLH family protein