PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf01700g03017.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 290aa MW: 32663.3 Da PI: 4.5957

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf01700g03017.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.5	1.5e-10	217	256	11	55
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +RR+riN+++ +L+ l+P+ +K++ +++Le+Av+Y+k Lq Niben101Scf01700g03017.1 217 KRRERINEKLKTLQNLIPNG-----TKVDISTMLEEAVQYVKFLQ 256 8***************97.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.703	206	255	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.0E-9	210	261	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.19E-12	217	272	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.5E-8	217	256	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.0E-12	217	270	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.23E-11	217	259	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MEPVASVSGE WSFFSGMYLT EEADFMAQLL GNCSLPNELP STYWSDHEST MNMGGAREVS 60 VYSSNDTNNS MYSGGSGSCF PPRNHESDYS SHSRPILMRN DSSITMEYGH VEGQINPIEA 120 DDFLNRDHVS NDSMEYNENM PEAALDGNGL QLGRRDYYEQ IPEDKMDSSS ESSKKRSRLH 180 GPAHVPNNKR SAKLEKAVLQ RQNSMISCCS EDESVNKRRE RINEKLKTLQ NLIPNGTKVD 240 ISTMLEEAVQ YVKFLQLQIT LLSSDDQWMY APIAYNGMDL GLDLRIGIPK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019233910.1	0.0	PREDICTED: transcription factor bHLH84-like
TrEMBL	A0A1J6KCD2	0.0	A0A1J6KCD2_NICAT; Transcription factor bhlh85
STRING	XP_009758954.1	1e-171	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA639	22	101

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G14760.3	1e-38	bHLH family protein