PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01710g04007.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 253aa    MW: 27950.5 Da    PI: 6.7813
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01710g04007.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.93.6e-1361107354
                               HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                       HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                               ++h+e+ErrRR+riN  + +Lr l+P        K++Ka+ L k++ +Ik+L
  Niben101Scf01710g04007.1  61 KNHSEAERRRRERINGHLGTLRNLIPGT-----NKMDKAALLAKVISCIKEL 107
                               58*************************6.....5****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.02758107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-1061107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.9E-1462110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-1362110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-1164113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048733.29E-6146217No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MEFFNSFNGF YEDNGFQGIM TNGSTSSSSL ILDNERGELV KSMVRSGEKG VNPEKALIAL  60
KNHSEAERRR RERINGHLGT LRNLIPGTNK MDKAALLAKV ISCIKELRVN AAEATKGVLV  120
PTDTDEVSVE QQTEGSNGAT YSVKASLCCE YKHELISDLR QALDTLPLKT LRAEIATLGN  180
RMVSVFVITE GNEGNIEDNE RCQLLVTSVR QALRSVLDKF YASEEFSSRS TLSSKRRRVS  240
LDSSSSSSLG DFW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16671ERRRRE
2234238KRRRV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009611307.11e-158PREDICTED: transcription factor bHLH30-like
RefseqXP_016491701.11e-158PREDICTED: transcription factor bHLH30-like
TrEMBLA0A1S4BS571e-157A0A1S4BS57_TOBAC; transcription factor bHLH30-like
STRINGXP_009611307.11e-158(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA119892123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.13e-33bHLH family protein