PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01717g01007.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 561aa    MW: 64112.9 Da    PI: 5.4638
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01717g01007.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.91.4e-11318361654
                               HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                       HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                                ++Er+RR+++N+++  Lr l+Pk +      Kl+ a+iL  A+eY+ +L
  Niben101Scf01717g01007.1 318 LMAERKRRKKLNERLYALRALVPKiS------KLDRASILGDAIEYVMEL 361
                               589*********************66......**************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142159.6E-186153IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088815.656312361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.88E-12314366No hitNo description
SuperFamilySSF474592.88E-16315375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-9317362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-15318367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-16319375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 561 aa     Download sequence    Send to blast
MELMDLMERL RPIMGLKNWD YCVLWKLSED QRFLEGICCC CGGAEQNMHS CEQEILFPDS  60
STSPCRDVMF QHPRTTACDL LAQLPSSLVL DSGIYGQALL SNQAKWLNFA PFSESNMSNE  120
TIGTRVLIPS PLGLLELFSA KQLAEDEKVI DFVSTQSNIY LEQHKFPSNG DDNTNSQNLY  180
QQIVSPATSR DHSDQLSYDF PLKRKNLATS SVNFLPHFNS YNTSEIENNT TTMLFDQNTS  240
DVTHFSTSME NKYMSEMDAY LHKQLMRNGS NKTGLIDDET VKQHENERSH SGSDSDQNED  300
EDDPKFRRRN GKGQSKNLMA ERKRRKKLNE RLYALRALVP KISKLDRASI LGDAIEYVME  360
LEKQVKDLQL ELEEHSDDDQ GGRNQNQVQP EVLGQNGSDH NNRPISENGK FSNGSHRGIS  420
ANSNGSIDPS RQNQELEEND KLQQMEPQVE VAQLDGNEFF VKVFREYKAG GFVRILEALN  480
SLGLEKRDNE MVQADNVRES LLELTRNPSR GWSEMGRSLS ENNANGSTDY FHNNQHQHHL  540
ENNHQKQAAN SHHFHRHHHM K
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1306326RRRNGKGQSKNLMAERKRRKK
2320327ERKRRKKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019225210.10.0PREDICTED: transcription factor ABORTED MICROSPORES
TrEMBLA0A314KTZ90.0A0A314KTZ9_NICAT; Transcription factor aborted microspores
STRINGXP_009786139.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA96722227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.11e-122bHLH family protein