PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf01734g01022.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 205aa MW: 23477.1 Da PI: 10.4961

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf01734g01022.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	86	5.9e-27	94	182	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 fY++YAk+vGF +r+++ ++s+ +++i +r++ C+k+g+ + k++ r+tr++tr gCka++ vk +k++kw+vt++++eH+ Niben101Scf01734g01022.1 94 FYDDYAKRVGFIMRIDQCRRSEVDKRILSRRLSCNKQGYYVKVKNHYGPPRKTRTSTREGCKAMMLVKVNKSDKWVVTRFVKEHT 178 9******************************************99************************************ PP FAR1 87 Hela 90 H+l Niben101Scf01734g01022.1 179 HSLI 182 *995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.9E-24	94	182	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MCVSRRRARI VRRNVRNPNS SFNDHKPFSF GPKCNIIGFF SIKITSAVHT MDLEAGAATI 60 DCSAESQLVA CEDNVVREPF IGMEFESEDA AKGFYDDYAK RVGFIMRIDQ CRRSEVDKRI 120 LSRRLSCNKQ GYYVKVKNHY GPPRKTRTST REGCKAMMLV KVNKSDKWVV TRFVKEHTHS 180 LIASGCSSRN AMVRVTRFII KQHSL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009779434.1	1e-101	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_009779435.1	1e-101	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A1U7WYX6	1e-100	A0A1U7WYX6_NICSY; protein FAR1-RELATED SEQUENCE 5-like
STRING	XP_009779434.1	1e-101	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11602	20	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	6e-45	FAR1 family protein