PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf01734g01038.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 262aa MW: 30460 Da PI: 5.8589

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf01734g01038.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	80.9	2.2e-25	87	176	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwevtklel 83 +fY +Y+++vGF+vr++++++s+ n+ ++ ++fvCskeg+re++ +++++ + + tr gC a l+v ++ ++kw+vtk+++ Niben101Scf01734g01038.1 87 DFYMAYGRRVGFTVRIHHNRRSRINNVVIGQDFVCSKEGFREKKYIHRKDR-VlpPPPATREGCPAILRVALR-ESKWVVTKFVK 169 6****************************************98883332.2448899**********.9****** PP FAR1 84 eHnHela 90 eHnH+l+ Niben101Scf01734g01038.1 170 EHNHALM 176 ***97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.8E-23	87	176	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MGFYKSDVAM GSPSSPAFGL DERKDFPPVE SNDDHGYFDE DLTTDMDMYI AEDDKCLGHS 60 NGEQTSSDDA IEPQIGMEFN SRDDARDFYM AYGRRVGFTV RIHHNRRSRI NNVVIGQDFV 120 CSKEGFREKK YIHRKDRVLP PPPATREGCP AILRVALRES KWVVTKFVKE HNHALMSPSE 180 VPWRGSTKKL VSQDEKDQRI RELTLELYNE RQRCKRRCAA YQEQLQTLLK FIDDHTDHLS 240 RSVEEAVQRV KELDNERLEE SD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	210	215	RQRCKR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009779431.1	0.0	PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like
Refseq	XP_009779432.1	0.0	PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like
Refseq	XP_009779433.1	0.0	PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like
Refseq	XP_016440133.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 8-like isoform X1
Refseq	XP_016440134.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 8-like isoform X1
Refseq	XP_016440135.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 8-like isoform X1
TrEMBL	A0A1S3XJW9	0.0	A0A1S3XJW9_TOBAC; protein FAR1-RELATED SEQUENCE 8-like isoform X1
TrEMBL	A0A1U7WLI6	0.0	A0A1U7WLI6_NICSY; protein FAR-RED ELONGATED HYPOCOTYL 3-like
STRING	XP_009779431.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA14445	9	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	5e-38	FAR1 family protein