PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01739g03001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family FAR1
Protein Properties Length: 421aa    MW: 47894.4 Da    PI: 9.6033
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01739g03001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR179.18.2e-2586193191
                      FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.................tekerrtraetrtgCkaklkv 68 
                               +fY+eYAk++ F   +++s++s+ +g++++++fvCs++g+++e +++                 ++k r +r+ ++t+Cka+l+v
  Niben101Scf01739g03001.1  86 SFYKEYAKSIRFPSIIKASRRSRISGKFIDAKFVCSRYGSKREPSTSvtepvpsadgrgsipvrRKKGRINRSWSKTDCKACLHV 170
                               5******************************************99999**************99999999*************** PP

                      FAR1  69 kkekdgkwevtkleleHnHelap 91 
                               k++ dg+w + ++++eHnHe++p
  Niben101Scf01739g03001.1 171 KRRPDGRWIIRTFVKEHNHEIFP 193
                               ********************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.1E-2186193IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MVIDLEHPSG DQHKEKEDCG HHIRGATATA SKSVCLDRGN AGTSWNEGTS NGTYVLPNAD  60
SLAVNCYRFL KPHDGMEFDS KEDAFSFYKE YAKSIRFPSI IKASRRSRIS GKFIDAKFVC  120
SRYGSKREPS TSVTEPVPSA DGRGSIPVRR KKGRINRSWS KTDCKACLHV KRRPDGRWII  180
RTFVKEHNHE IFPDRTNYLR GHRITDLGKN GADAFHSICG RTKKTCMTMS RQSGVMKKVV  240
DRFDLRNDLW IKSLYKGRLR WEPTFMNNIS LAGMSTMQRS ESVSSLLDKC MLCRTTLKEF  300
LDQYKKLLRE KCQEEAIAGL KVQRLERTRE VNLVDSRVQR CNDLCQRAFE LGDEGCEAVN  360
DPNLNESEPC FPTNQVFIDS NNPSKSNGQN IARKEKVGQS GLREPTVDYP FQSHSAMQPM  420
V
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009772379.11e-156PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like isoform X8
RefseqXP_009772385.11e-156PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like isoform X9
RefseqXP_009772389.11e-156PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like isoform X10
RefseqXP_009772402.11e-156PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like isoform X12
RefseqXP_016509201.11e-156PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like isoform X5
TrEMBLA0A1S4D7671e-154A0A1S4D767_TOBAC; protein FAR-RED IMPAIRED RESPONSE 1-like isoform X5
TrEMBLA0A1U7VX861e-154A0A1U7VX86_NICSY; protein FAR-RED IMPAIRED RESPONSE 1-like isoform X12
TrEMBLA0A1U7WCJ81e-154A0A1U7WCJ8_NICSY; protein FAR-RED IMPAIRED RESPONSE 1-like isoform X8
TrEMBLA0A1U7WCK81e-154A0A1U7WCK8_NICSY; protein FAR-RED IMPAIRED RESPONSE 1-like isoform X10
TrEMBLA0A1U7WDT41e-154A0A1U7WDT4_NICSY; protein FAR-RED IMPAIRED RESPONSE 1-like isoform X9
STRINGXP_009772328.11e-155(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49621103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G19990.16e-39FAR1-related sequence 1