PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf01764g02015.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Protein Properties

Length: 250aa MW: 28528.5 Da PI: 6.0742

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf01764g02015.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	30.7	5.4e-10	95	184	1	83
EEEE-..-HHHHT..T-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT- CS B3 1 ffkvltpsdvlks..grlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangL 74 f k+lt+ d ++ g l lp k +++ +g ++k ltl d +g++W++ + ks++y+l++ W ++v+ +L Niben101Scf01764g02015.1 95 FSKKLTKYDLKRRfgGGLKLPLKLVTDKilvhisapaDGG--KGKPLTLVDHEGKKWNMLF--VLKSKKYYLRGKWYDYVEKYEL 175 6677766555555888899999999888899999877444..4556*************..888999************ PP -TT-EEEEE CS B3 75 kegDfvvFk 83 k+ D+++++ Niben101Scf01764g02015.1 176 KDSDTIIIE 184 ****998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	8.9E-13	88	189	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.43E-10	94	186	No hit	No description
SuperFamily	SSF101936	1.04E-12	94	190	IPR015300	DNA-binding pseudobarrel domain

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MAPTVTEAMY QNLSTASLQF NDCNLIIKNV SKMKESGQET DAIVNSRDIV HEGILEKVRD 60 EETIITNEKR MEDHTLQFTN SGGQMTTSTK REEIFSKKLT KYDLKRRFGG GLKLPLKLVT 120 DKILVHISAP ADGGKGKPLT LVDHEGKKWN MLFVLKSKKY YLRGKWYDYV EKYELKDSDT 180 IIIEKVTISK EQVKEEVDFA AVNQIGNHDW DTIYPKSAGE YQQIEIKAEV DVEVEYEITI 240 KRGPGNTATE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009791938.1	1e-121	PREDICTED: uncharacterized protein LOC104239105
TrEMBL	A0A314L790	1e-129	A0A314L790_NICAT; Uncharacterized protein
STRING	XP_009791938.1	1e-120	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA14765	2	3