PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf01764g02020.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NF-YB

Protein Properties

Length: 158aa MW: 17714.2 Da PI: 4.4356

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf01764g02020.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	75.6	7.6e-24	11	94	3	86
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvy 86 ++d+ lP a +++i+k++lP + ++++da++++ ec +efi +++se+++ c+re+++ti+++ +l al lGf +y+e++ + Niben101Scf01764g02020.1 11 KEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLISSESNEVCNREDKRTIAPEHVLKALEVLGFGEYIEEVYAA 94 6899***************************************************************************98654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	3.5E-38	8	138	IPR009072	Histone-fold
SuperFamily	SSF47113	6.13E-34	12	138	IPR009072	Histone-fold
Pfam	PF00808	9.6E-22	14	79	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 158 aa Download sequence Send to blast
MDPMDIVGKT KEDASLPKAT MTKIIKEMLP PDVRVARDAQ DLLIECCVEF INLISSESNE 60 VCNREDKRTI APEHVLKALE VLGFGEYIEE VYAAYEQHKL ETVDTVRAGK CSNVAEMTEE 120 EALAAQQRMF AEARARMNRV VAAPPKQQDS EAEQKLDS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_B	1e-34	12	134	12	133	Transcription Regulator NC2 beta chain
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009764632.1	1e-113	PREDICTED: protein Dr1 homolog
Refseq	XP_016487102.1	1e-113	PREDICTED: protein Dr1 homolog
Refseq	XP_019230808.1	1e-113	PREDICTED: protein Dr1 homolog
Swissprot	P49592	1e-85	NC2B_ARATH; Protein Dr1 homolog
TrEMBL	A0A1S4BE17	1e-112	A0A1S4BE17_TOBAC; protein Dr1 homolog
TrEMBL	A0A1U7V9A5	1e-112	A0A1U7V9A5_NICSY; protein Dr1 homolog
TrEMBL	A0A314KIY8	1e-112	A0A314KIY8_NICAT; Protein dr1-like protein
STRING	XP_009764632.1	1e-112	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3820	22	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23090.4	1e-89	nuclear factor Y, subunit B13

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]