PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01774g04007.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bZIP
Protein Properties Length: 139aa    MW: 16307.5 Da    PI: 9.2606
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01774g04007.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_148.42e-1554111562
                               CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                    bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                               ++ rrk +NRe+ArrsR RKk+ +++L++ v++L+ eN++Lk++l   + ++++ +se
  Niben101Scf01774g04007.1  54 RKRRRKVSNRESARRSRFRKKKHLDNLTDQVDQLKVENRELKNRLYVATHQCQAAQSE 111
                               6789************************************************988776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003385.7E-1250114IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.0825298IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.2E-1054106No hitNo description
SuperFamilySSF579599.38E-1254105No hitNo description
PfamPF001706.3E-1254108IPR004827Basic-leucine zipper domain
CDDcd147025.98E-1555106No hitNo description
PROSITE patternPS0003605772IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MMFEDLVHYH LPVLEDVLSP NDIHEILSFL QTELPAPSTS GSETNRSVFS LEERKRRRKV  60
SNRESARRSR FRKKKHLDNL TDQVDQLKVE NRELKNRLYV ATHQCQAAQS ETDRLILEST  120
VLQQKLAGLC QILHNMQRQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15357RKRRR
25674RRKVSNRESARRSRFRKKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028065855.11e-44basic leucine zipper 4-like
TrEMBLA0A2G2ZRB51e-73A0A2G2ZRB5_CAPAN; Uncharacterized protein
STRINGPGSC0003DMT4000125753e-66(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28202251
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49760.11e-25basic leucine-zipper 5