PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01784g00009.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 367aa    MW: 40464.9 Da    PI: 10.153
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01784g00009.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.91.3e-30294351359
                               -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                               D ++WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+v+++tYegeH+h+
  Niben101Scf01784g00009.1 294 DDFSWRKYGQKPIKGSPHPRGYYKCSSIrGCPARKHVERALDDPNVLIVTYEGEHDHP 351
                               99***********************9988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.0E-15242290IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.805.1E-32281351IPR003657WRKY domain
PROSITE profilePS5081130.274287353IPR003657WRKY domain
SuperFamilySSF1182901.57E-26289352IPR003657WRKY domain
SMARTSM007745.4E-37292352IPR003657WRKY domain
PfamPF031064.3E-26294351IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MAVDLMTTGY RNNNTYTSKM EGNAMQEAAA GLQSVEKLIR LLSQSQSQNH SQKPKQSFQD  60
PSIKTNSTLD FSPDYLAVAD TAVNKFKKFI SLLDRTRTGH ARFRRGPITT TSSPFLHKEP  120
ELLCLPASIQ NRPAEEKIKT EYPQAGSKIY CPTPIQRLPP LPLNHHHHHQ QLVKNGSKSE  180
RKESTTTINF ATPSPGNSFI SSLTGDTESL QPSSMTSSGF QITNLSQVSS AGRPPISTSS  240
FKRKCSSMDD LAVKCSSAGG SAGRCHCPKK RKSKVKRVVR IPAISMKMAD IPPDDFSWRK  300
YGQKPIKGSP HPRGYYKCSS IRGCPARKHV ERALDDPNVL IVTYEGEHDH PFSITDTPPA  360
AIVLESS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-22280360276WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016474474.10.0PREDICTED: probable WRKY transcription factor 7
SwissprotQ9STX03e-94WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A1S4ACY90.0A0A1S4ACY9_TOBAC; probable WRKY transcription factor 7
STRINGXP_009600900.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12202479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.11e-82WRKY DNA-binding protein 7