PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf01784g07015.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Protein Properties

Length: 253aa MW: 28902.4 Da PI: 10.0527

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf01784g07015.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	48.1	2e-15	11	99	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldg 86 ffkv++p + ++ l +p +f+ + +g+k e + tl++ +W+v++ +++++ +++ kGW++Fv+ +L+ gDf vF++ g Niben101Scf01784g07015.1 11 FFKVMVP---GFHAKLPIPPDFCLKLKGEKSE--KGTLKH-GKGTWNVEI--GRSKNGvVWFDKGWEQFVQNYNLRIGDFAVFEHLG 89 6677744...4456699****999887555..566666.4569*..77777779************************* PP SSEE..EEEEE- CS B3 87 rsefelvvkvfr 98 +++f +v++++ Niben101Scf01784g07015.1 90 NMNF--NVSLLD 99 9999..888776 PP
2	B3	48.2	2e-15	166	241	14	89
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrse 89 l +p +f+ ++ + +++ +tl+ +sg s v+l+++ ++++ +++t+GW++F +n+Lk+gD+++F+ d++++ Niben101Scf01784g07015.1 166 PYLHIPTEFCHSNALL--QNTIITLTGPSGISCPVNLRICSGGKTlyVIMTTGWRNFFLSNRLKVGDVCIFQIDRTNS 241 4589****999777..5678***********6655555588999********************887633 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	11.744	8	101	IPR003340	B3 DNA binding domain
CDD	cd10017	1.26E-14	9	99	No hit	No description
Gene3D	G3DSA:2.40.330.10	1.5E-20	9	103	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.55E-18	10	103	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	2.2E-14	11	101	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.6E-12	11	99	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	2.0E-16	149	241	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.31E-17	151	239	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.99E-15	152	242	No hit	No description
SMART	SM01019	1.1E-4	152	245	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.644	153	253	IPR003340	B3 DNA binding domain
Pfam	PF02362	5.3E-13	167	240	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MENQLPISRR FFKVMVPGFH AKLPIPPDFC LKLKGEKSEK GTLKHGKGTW NVEIGRSKNG 60 VVWFDKGWEQ FVQNYNLRIG DFAVFEHLGN MNFNVSLLDS TGCDKKYLML EDGKKQQQHV 120 PSQVKSPQCR IEKRKPEGDV LLHQYVEGSS EFTARIKEYN VRKRSPYLHI PTEFCHSNAL 180 LQNTIITLTG PSGISCPVNL RICSGGKTLY VIMTTGWRNF FLSNRLKVGD VCIFQIDRTN 240 SNSKSITMNV RVM

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019228605.1	0.0	PREDICTED: B3 domain-containing protein REM8-like
TrEMBL	A0A314KN31	0.0	A0A314KN31_NICAT; B3 domain-containing protein rem8
STRING	XP_009773257.1	1e-177	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8536	16	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24700.1	4e-21	B3 family protein