PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf01785g07001.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

WRKY

Protein Properties

Length: 297aa MW: 33352.6 Da PI: 5.3422

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf01785g07001.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	33.7	7.3e-11	193	214	2	23
--SS-EEEEEEE--TT-SS-EE CS WRKY 2 dDgynWrKYGqKevkgsefprs 23 +Dgy+WrKYGqK vk+s++p s Niben101Scf01785g07001.1 193 EDGYRWRKYGQKAVKNSPYPSS 214 8******************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.7E-11	178	213	IPR003657	WRKY domain
SuperFamily	SSF118290	7.59E-9	184	213	IPR003657	WRKY domain
PROSITE profile	PS50811	12.748	187	214	IPR003657	WRKY domain
SMART	SM00774	1.3E-4	192	223	IPR003657	WRKY domain
Pfam	PF03106	6.9E-7	193	214	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MADELRDFYY HQPFQEDIRL GYNNLYSQTR VGDSNDSSVV QNIHMLDPSF MSYTHEYLHG 60 SSSDYANSLG KPFGFSAPST PSDQAFSSII NKDHDVKPVL DVINNNDVIV GGGSETPVTP 120 NSSFSNSSSN EAAADDQDSN KSTNNTNKDK EVKENLEDGE DASKKENKAK KKEKTQRPPK 180 FAFMTKSEVD HLEDGYRWRK YGQKAVKNSP YPSSPSPLMA TPQAFHQQLM NMAQMPHQFY 240 GSSGLGINPP TNSSSNMYNQ NVITQHEIHQ QLQFSPDYGL LQDMVPSMFL KQEPRES

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019231707.1	0.0	PREDICTED: probable WRKY transcription factor 71
TrEMBL	A0A1J6JA38	0.0	A0A1J6JA38_NICAT; Putative wrky transcription factor 71
STRING	XP_009760855.1	1e-178	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1485	24	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47260.1	4e-20	WRKY DNA-binding protein 23