PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf01785g10012.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 300aa MW: 33848.1 Da PI: 5.4689

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf01785g10012.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.5	7.6e-06	242	286	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + n E++RR ++++ L+ ++P + +++ +++L +Av+Y+ksL Niben101Scf01785g10012.1 242 TSNCSEKKRR-KLKKMVKALKGIVPGS-----SRMNTVTVLDEAVRYLKSL 286 5688999998.7***********97.....7**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.944	237	286	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.83E-9	239	296	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.03E-8	241	291	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.4E-8	241	297	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.3E-8	244	292	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
VLATVSVAWI EDYNILSWTD QHAVGVFFFE LLCERYRAVK EAGEIKMHAG SVAYCQLMLV 60 CQSNYQFSPQ KPFFSPEDQA GGGNLFDIPS PSVFGTMALP NGFNPSVPVH GFEFQSSEAC 120 PKNFIIFDQT DYRSQIMFHP AMASKFPYPD LNFKTYFQDG MERKVAKNEN TEVSSYLKED 180 SADINALLSF EEEEHEEYDD EELSTARTDA NYGNSSPESF SNYDCQSKKS RTTSFRKSSG 240 STSNCSEKKR RKLKKMVKAL KGIVPGSSRM NTVTVLDEAV RYLKSLKVEV QKLGVENLKT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	247	251	KKRRK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019226808.1	1e-158	PREDICTED: transcription factor bHLH144
TrEMBL	A0A2G2XEA8	1e-158	A0A2G2XEA8_CAPBA; Uncharacterized protein
STRING	XP_009801820.1	1e-156	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8124	19	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29950.2	4e-28	bHLH family protein