PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01818g08019.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 313aa    MW: 35142.1 Da    PI: 5.0081
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01818g08019.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.77e-194593355
                       AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                              y GVr+++ +gr++AeIrdp++   + r++lg+f+taeeAa a+++a+++++ 
  Niben101Scf01818g08019.1 45 YLGVRRRP-WGRYAAEIRDPNT---KERHWLGTFDTAEEAALAYDRAARSMRS 93
                              88******.**********933...5************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.7E-184499IPR016177DNA-binding domain
SMARTSM003809.0E-2744107IPR001471AP2/ERF domain
CDDcd000189.96E-2644106No hitNo description
PROSITE profilePS5103220.15244101IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-2644100IPR001471AP2/ERF domain
PRINTSPR003671.3E-84556IPR001471AP2/ERF domain
PfamPF008473.7E-124593IPR001471AP2/ERF domain
PRINTSPR003671.3E-86783IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MNIIKSSTSS SANKSTKPRK NIGSNVCSTQ NGKQNAEEQQ NNYRYLGVRR RPWGRYAAEI  60
RDPNTKERHW LGTFDTAEEA ALAYDRAARS MRSNNNKSNK PIRTNFVYSD MPHGSSVTCM  120
ISPDEEYHHQ FQLHQQQLLI FDQADQNAAH TVNYTDFSHF SINNISNISN DGGGGEYFAL  180
QQYYNSNNDV HMEDGYRYDS NNATSTELPP LPEDITSSGK CYYFSEESNN QGAQFPAISS  240
VSEHMGYSSS NSTSLLNEMI MPRSFGTNNE YQYDMTCGEL GGGSTITTTS CTTTESYNGF  300
GFDDCLQPLQ YCS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-1945105667ATERF1
3gcc_A2e-1945105667ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019242459.11e-155PREDICTED: ethylene-responsive transcription factor LEP-like
TrEMBLA0A1J6IY261e-154A0A1J6IY26_NICAT; Ethylene-responsive transcription factor lep
STRINGXP_009598690.11e-150(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53831934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.11e-27ERF family protein