PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01826g02015.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 164aa    MW: 19200.6 Da    PI: 7.2613
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01826g02015.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.0003116139123
                               EEETTTTEEESSHHHHHHHHHH.T CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                               +kC++C ksF+    L +H  + H
  Niben101Scf01826g02015.1 116 WKCGYCRKSFRAEKFLDQHFDNrH 139
                               58**********999999976655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.725116141IPR007087Zinc finger, C2H2
PROSITE patternPS000280118139IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MENLRQRRAK NPCSLLLSFV LITALSSSIS ATSPLPHSDQ GTEQHASSPE QDKPHIHEVH  60
CSRDRSRAAW KVIDEYLMPF VEREKYELPR QCRLHPSNDI FRDQEEHKIH LDVNEWKCGY  120
CRKSFRAEKF LDQHFDNRHS NLLDVGCWEY VSCWLGASSG LCYK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019243563.11e-102PREDICTED: uncharacterized protein LOC109223634
TrEMBLA0A1J6IW361e-100A0A1J6IW36_NICAT; Uncharacterized protein
STRINGXP_009763479.12e-99(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA80841216
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63280.15e-45C2H2-like zinc finger protein