PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf01833g00002.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

WRKY

Protein Properties

Length: 279aa MW: 31301 Da PI: 7.8796

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf01833g00002.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	104.5	5.8e-33	144	202	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYGqK vk+s+fprsYYrCt+ +C vkk+vers +d+++v++tYeg+H+h+ Niben101Scf01833g00002.1 144 LDDGFRWRKYGQKAVKNSPFPRSYYRCTTVSCGVKKRVERSIKDTSIVVTTYEGTHTHP 202 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	6.6E-33	129	202	IPR003657	WRKY domain
SuperFamily	SSF118290	1.96E-28	136	202	IPR003657	WRKY domain
PROSITE profile	PS50811	29.046	139	204	IPR003657	WRKY domain
SMART	SM00774	7.3E-38	144	203	IPR003657	WRKY domain
Pfam	PF03106	4.6E-26	145	202	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MEKENKLKSE TSLENPMFSQ QIQTEKDSLG FLDNMFGAHL LDFNTTIPSI FDLLQTSPPQ 60 SLTNIPSPTS TFQESCEVEV VNSLSISSSS TEAAEDDQQS NTVKQQDEDE DKYKKQLKPK 120 KKNVQKRQRE PRFAFMTKSE IDHLDDGFRW RKYGQKAVKN SPFPRSYYRC TTVSCGVKKR 180 VERSIKDTSI VVTTYEGTHT HPCRITPSRG SIGGVLPRTT AYYGGAIGGG NGGGGTCSNS 240 SLSIPQLQYY QEQQQQMLHS LTTTSPLNNF NNILFIVLE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	8e-26	137	201	10	74	Probable WRKY transcription factor 4
2lex_A	8e-26	137	201	10	74	Probable WRKY transcription factor 4
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019236030.1	1e-131	PREDICTED: probable WRKY transcription factor 23
TrEMBL	A0A1J6K2J0	1e-130	A0A1J6K2J0_NICAT; Putative wrky transcription factor 23
STRING	XP_009770697.1	1e-130	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1309	24	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49520.1	3e-44	WRKY DNA-binding protein 48