PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01848g02010.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 144aa    MW: 15765.9 Da    PI: 7.0925
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01848g02010.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.61.8e-142391148
                              HHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
                    SRF-TF 11 vtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                              vtfskRr+g++KKA EL  ++ a+va i+fs+tgk y+
  Niben101Scf01848g02010.1  2 VTFSKRRKGLFKKALELESMTCARVAAIVFSPTGKPYT 39
                              9*********************************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006614.83144IPR002100Transcription factor, MADS-box
PfamPF003193.4E-16139IPR002100Transcription factor, MADS-box
SMARTSM004321.3E-4243IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-13247IPR002100Transcription factor, MADS-box
PRINTSPR004048.1E-6621IPR002100Transcription factor, MADS-box
PRINTSPR004048.1E-62142IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MVTFSKRRKG LFKKALELES MTCARVAAIV FSPTGKPYTC GDVSSAVDRH FSSSIDPSSG  60
SADVSNGSSG SRSTLSKNGL CKWLENIDVE ECENLNELLL LKEQLEGTKE KLACMEDSET  120
FLSLTSSGFD PTERSTRDKK LLKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009617106.13e-53PREDICTED: MADS-box transcription factor 23-like
RefseqXP_016508949.13e-53PREDICTED: agamous-like MADS-box protein AGL29
TrEMBLA0A1S4D6M96e-52A0A1S4D6M9_TOBAC; agamous-like MADS-box protein AGL29
STRINGXP_009617106.11e-52(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23371757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.19e-11AGAMOUS-like 29