PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01852g04031.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bZIP
Protein Properties Length: 572aa    MW: 63003.6 Da    PI: 7.1234
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01852g04031.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.73.7e-11410468563
                               CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                    bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                               kr++r   NR +A rs +RK  +i+eLe kv++L++e ++L  +l  l+  ++ l+s++
  Niben101Scf01852g04031.1 410 KRAKRILANRQSAARSKERKMRYIAELEHKVQTLQTEATTLSAQLTLLQRDSSGLTSQN 468
                               9*************************************************999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.3E-18406470IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.875408471IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1705.5E-11410467No hitNo description
PfamPF001706.5E-10410468IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.03E-11410460No hitNo description
CDDcd147032.23E-23411460No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MGGESDEANT EMMRRLQWSF GTSSSSLQKP QYISTNQLEI PQLSTSQFHG QMRQFSPNFG  60
VENSSKRVGL SPSHPQMPPI SPYSHIPVSR PISQQHGMQN FTTQGPSHSR SLSQPSFFSL  120
DSLPPLSPSP YKESLSTFIS DPVAADVSME DRDGNSHSSL PPSPFSRCNS SRVGESLPPR  180
KAHRRSNSDI PFGFSSIMQS SPPLVPSRSP AQLVKRESYS DKSNKNAEGM GERKSEGEVV  240
DDLFSAYMNL DNIGLLNSSG IDEKQGNENR EDLDSRASGT KTNGCDSSDN EATSSVNDSG  300
SSMHTLGVSS STEKREGIKR SAEGDIAPTV RHYRSISMDS FMGKLNFGDE SPKLPPSPGP  360
LHGQLSPTNS LDANSESFSL EFGNGEFNGA ELKKIMANEK LAEIALADPK RAKRILANRQ  420
SAARSKERKM RYIAELEHKV QTLQTEATTL SAQLTLLQRD SSGLTSQNNE LKFRLQAMEQ  480
QAHLRDALNE ALTAEVQRLK IATAELNGDA AKFQQLSLNP QMFQLQRQQA TQLSMHQLQH  540
QQQQQQLQEK ASSQHQQHAQ TKQQQQNSSA LS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009625788.10.0PREDICTED: probable transcription factor PosF21
RefseqXP_009625795.10.0PREDICTED: probable transcription factor PosF21
RefseqXP_009625801.10.0PREDICTED: probable transcription factor PosF21
TrEMBLA0A1S4CWD20.0A0A1S4CWD2_TOBAC; probable transcription factor PosF21
STRINGXP_009625788.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12652478
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38900.31e-156bZIP family protein