PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf01859g09005.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Protein Properties

Length: 254aa MW: 28950.5 Da PI: 9.9409

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf01859g09005.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	49.2	9.3e-16	11	99	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldg 86 ffkv++p + ++ l++p +f+ + +g+k e + tl++ +W+v++ +++++ +++ kGW++Fv+ +L+ gDf vF++ g Niben101Scf01859g09005.1 11 FFKVMVP---GFHAKLTIPPDFCLKLKGEKSE--KGTLKH-GKGTWNVEI--GRSKNGlMWFDKGWEQFVQNYNLRIGDFAVFEHLG 89 6777744...456679*****999887555..566666.4569*..888888899**********************99 PP SSEE..EEEEE- CS B3 87 rsefelvvkvfr 98 +++f v++++ Niben101Scf01859g09005.1 90 NMNF--SVSLLD 99 9999..777766 PP
2	B3	43.4	6e-14	167	242	14	88
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgr.s 88 l +p +f+ ++ + +++ +tl+ +sg s v l+++ ++++ ++t+GW++F + +Lk+gD+++F+ d++ s Niben101Scf01859g09005.1 167 PYLHIPTEFCHSNALL--QNTIITLTGPSGISCPVSLRICSGGRTlyAIMTTGWRNFFLSSKLKVGDVCIFQIDRTnS 242 4589****999777..5678***********7766666688899********************887634 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	11.956	8	101	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	1.0E-20	9	103	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.66E-15	9	99	No hit	No description
SuperFamily	SSF101936	1.63E-18	10	103	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	1.2E-14	11	101	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.2E-12	11	98	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	3.7E-15	150	248	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	6.02E-16	152	239	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	0.004	153	246	IPR003340	B3 DNA binding domain
CDD	cd10017	4.55E-13	153	242	No hit	No description
PROSITE profile	PS50863	9.953	154	254	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.3E-11	168	243	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MENELPISRR FFKVMVPGFH AKLTIPPDFC LKLKGEKSEK GTLKHGKGTW NVEIGRSKNG 60 LMWFDKGWEQ FVQNYNLRIG DFAVFEHLGN MNFSVSLLDS TGCDKKYLML EDGKQQQQEQ 120 VPSQVKSPEC RIEKRKPKGD VVLHQYVKGS SEFTARIKEY NVRKRSPYLH IPTEFCHSNA 180 LLQNTIITLT GPSGISCPVS LRICSGGRTL YAIMTTGWRN FFLSSKLKVG DVCIFQIDRT 240 NSDSKSITMN VRVM

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019228605.1	0.0	PREDICTED: B3 domain-containing protein REM8-like
TrEMBL	A0A314KN31	0.0	A0A314KN31_NICAT; B3 domain-containing protein rem8
STRING	XP_009773257.1	1e-179	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8536	16	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00260.1	4e-18	B3 family protein